CV712657

Overview
NameCV712657
Unique NameCV712657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_BURP8 (NADH-quinone oxidoreductase subunit B OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 66/129 (51.16%), Postives = 97/129 (75.19%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F++TT++ L NW+R  SLWP+ +G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QM EP++VI+MG+C   GG +   SYS VRG D+++PVDVY+PGCPP  EA
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDVYVPGCPPTAEA 138          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_ACIC1 (NADH-quinone oxidoreductase subunit B OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=nuoB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = -2
Query:   16 LDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGL-VPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 423
            ++   P  F+ TT      W R SSLWP  +G +CC IE  +    R+D  R+G+ V R+SPRQADL++ AG V+ KMAP L ++Y+QMPEPK+V+AMG C  +GGMF  ++Y+ V+GVD ++PVD+YLPGCPP+PE
Sbjct:    3 IEEKIPGGFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRASPRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMF--NNYAIVQGVDHVVPVDMYLPGCPPRPE 137          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB2_ACIF5 (NADH-quinone oxidoreductase subunit B 2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 64/129 (49.61%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F++TT + + NW R  SLWP+ +G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMPEP++V++MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   11 FVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHY-SYSIVRGCDRIVPVDIYVPGCPPTAEA 138          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.586e-36
Identity = 64/129 (49.61%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ +  +DL NW+R  S+WP+ +G +CC +E      +R+D DR+G++ R SPRQ+D ++ AGT+T KMAP+L ++Y+QMPEP++VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   64 FVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 191          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            +++T+ + L NW+R  S+WP+ +G +CC +E      SR D DRYG+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 164          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_XANOP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            +++T+ + L NW+R  S+WP+ +G +CC +E      SR D DRYG+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   35 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 162          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_XANOM (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            +++T+ + L NW+R  S+WP+ +G +CC +E      SR D DRYG+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 164          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_XANC5 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            +++T+ + L NW+R  S+WP+ +G +CC +E      SR D DRYG+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 164          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 65/129 (50.39%), Postives = 96/129 (74.42%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            +++T+ + L NW+R  S+WP+ +G +CC +E      SR D DRYG+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 164          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_VARPS (NADH-quinone oxidoreductase subunit B OS=Variovorax paradoxus (strain S110) GN=nuoB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.296e-36
Identity = 64/129 (49.61%), Postives = 97/129 (75.19%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F++TT + + NW++  SLWP+ +G +CC +E      +R+D DR+G++ R SPRQ+DL++ AGT+  KMAP+L ++Y+QMPEP++V++MG+C   GG +   SYS VRG D+++PVDVY+PGCPP  EA
Sbjct:   11 FVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHY-SYSVVRGCDRIVPVDVYVPGCPPTAEA 138          
The following BLAST results are available for this feature:
BLAST of CV712657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_BURP85.586e-3651.16NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_ACIC15.586e-3651.09NADH-quinone oxidoreductase subunit B OS=Acidother... [more]
NUOB2_ACIF55.586e-3649.61NADH-quinone oxidoreductase subunit B 2 OS=Acidith... [more]
NDUS7_BRAOL5.586e-3649.61NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NUOB_XANOR7.296e-3650.39NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOP7.296e-3650.39NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOM7.296e-3650.39NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC57.296e-3650.39NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANAC7.296e-3650.39NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_VARPS7.296e-3649.61NADH-quinone oxidoreductase subunit B OS=Variovora... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712657 ID=CV712657; Name=CV712657; organism=Citrus sinensis; type=EST; length=802bp
GCATCTATAACGAGCCTCTGGTTTAGGCGGGCAACCCGGCAAATAAACAT
CCACGGGAATTAGCTTATCAACTCCTCGAACAGTACTATACGAATCGGTA
CTGAACATCCCCCCTGTAATTGTACATGCTCCCATAGCAATAACATATTT
TGGTTCAGGCATTTGTTCATATAATCTCACTAAAGAAGGAGCCATTTTCA
TTGTTACTGTACCAGCTGTTAAAATTAGGTCCGCCTGTCTAGGGCTCGAT
CTTGGTACCAGCCCATAACGGTCAAAATCGAACCGCGAGCCGATTAATGA
AGCAAATTCAATGAAACAACAACTGGTACCATAAAGAAGCGGCCATAAGC
TGGAGAGTCTTGACCAATTTGAAAGATCGTTTGATGTAGTTGAAATAAAT
GAATTTGGGGTTGTTCGATCAAGTAAGGAAAATTCAATAGAATTCATAAT
TCTCTCAATGTTATTTTTTGTTTTTTTTTTTTTTTTTACTTTTTTGTTAT
TGTCTGAATATTCAGAAACTAAGACCACTCTAATGCTCCTTTTCGCCACG
CATAAACTAAACCAACAATTAGGATAAGCATGAAAATGAAAGCTTCTATA
AATACGGGTACCCCCAATACATCAAAACTCATTGCCCATGGATAAAGAAA
AACGGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACATATAATACC
GGATTCGAAAATTGTAACCAAGCATCGCCCATTGGTTCGATACCCGATTC
ATAACTAGAAAGTTTCTCTGGCCCTTTGTTAATCGGGGCTAAAACTGCGG
AA
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