CV712657

Overview
NameCV712657
Unique NameCV712657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB1_SALTO (NADH-quinone oxidoreductase subunit B 1 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = -2
Query:   13 NWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS-SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 369
            NW R  SLW   +G +CC IEF +   SR DF R G++P +  PRQADL++ +GTVT KMAP++ RLY+QMPEPKYVI+ GAC+  GG +  DSYS  +GVD+LIPVDVY+PGCPP+PEA
Sbjct:   16 NWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPY-WDSYSVTKGVDQLIPVDVYVPGCPPRPEA 134          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB1_SALAI (NADH-quinone oxidoreductase subunit B 1 OS=Salinispora arenicola (strain CNS-205) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 72/120 (60.00%), Postives = 91/120 (75.83%), Query Frame = -2
Query:   13 NWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS-SPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 369
            NW R  SLW   +G +CC IEF +   SR DF R G++P +  PRQADL++ +GTVT KMAP++ RLY+QMPEPKYVI+ GAC+  GG +  DSYS  +GVD+LIPVDVY+PGCPP+PEA
Sbjct:   16 NWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPY-WDSYSVTKGVDQLIPVDVYVPGCPPRPEA 134          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NQO6_PARDE (NADH-quinone oxidoreductase subunit 6 OS=Paracoccus denitrificans GN=nqo6 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 66/129 (51.16%), Postives = 95/129 (73.64%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ TT+ D+ NW+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+DL++ AGT+T KMAP+L ++Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   27 FLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 154          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDUS7_NEUCR (NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial OS=Neurospora crassa GN=G17A4.170 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.625e-35
Identity = 65/126 (51.59%), Postives = 96/126 (76.19%), Query Frame = -2
Query:   13 TTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 390
            TT + + NW+R SSLWP+ +G +CC +E   L   R+D DR G++ R+SPRQ+D+++ AGT+T KMAP+L ++Y+QMP+P++VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   78 TTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTSEA 202          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_SPHAL (NADH-quinone oxidoreductase subunit B OS=Sphingopyxis alaskensis GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 65/129 (50.39%), Postives = 95/129 (73.64%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ T++ DL NW+R  SLW + +G +CC +E   +   R+D +R+G+ PR+SPRQ+D+++ AGT+  KMAP+L R+Y+QM  PKYVI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA
Sbjct:   30 FLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEA 157          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_ROSDO (NADH-quinone oxidoreductase subunit B OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 66/129 (51.16%), Postives = 95/129 (73.64%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ T++ D+ NW+R  SL  + +G +CC +E       R+D +R+G  PR+SPRQ+DL++ AGT+T KMAP+L ++Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++PVDVY+PGCPP  EA
Sbjct:   30 FLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDVYVPGCPPTAEA 157          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_RICBR (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain RML369-C) GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 69/142 (48.59%), Postives = 100/142 (70.42%), Query Frame = -2
Query:   13 EFSLLDRTTPNSFISTTS-NDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 435
            E  LL+    N  +  T  +D+  W+R +SLWP+ +G +CC +E      SR+D DR+G++ R SPRQ+DL++ AGT+T KMAP+L ++Y+QM EPK+V++MG+C   GG +   SYS VRG D+++PVDVY+PGCPP  EA
Sbjct:    8 EDELLNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHF-SYSVVRGCDRIVPVDVYVPGCPPTAEA 148          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_RICAH (NADH-quinone oxidoreductase subunit B OS=Rickettsia akari (strain Hartford) GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 69/142 (48.59%), Postives = 99/142 (69.72%), Query Frame = -2
Query:   13 EFSLLDRTTPN-SFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 435
            E  LL+    N  F+ T  +D+  W+R  SLWP+ +G +CC +E      SR+D DR+G++ R SPRQ+DL++ AGT+T KMAP+L ++Y+QM  PK+V++MG+C   GG +   SYS VRG D+++PVDVY+PGCPP  EA
Sbjct:    8 EDELLNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHF-SYSVVRGCDRIVPVDVYVPGCPPTAEA 148          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_RHILW (NADH-quinone oxidoreductase subunit B OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 64/129 (49.61%), Postives = 97/129 (75.19%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ T++++L NW+R  SL  + +G +CC +E   L   R+D +R+G  PR+SPRQ+D+++ AGT+T KMAP+L ++Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P+D+Y+PGCPP  EA
Sbjct:   47 FLVTSTDELINWARTGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPIDIYVPGCPPTAEA 174          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NUOB_RHIL3 (NADH-quinone oxidoreductase subunit B OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=nuoB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.123e-35
Identity = 64/129 (49.61%), Postives = 97/129 (75.19%), Query Frame = -2
Query:   13 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 399
            F+ T++++L NW+R  SL  + +G +CC +E   L   R+D +R+G  PR+SPRQ+D+++ AGT+T KMAP+L ++Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P+D+Y+PGCPP  EA
Sbjct:   47 FLVTSTDELINWARTGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPIDIYVPGCPPTAEA 174          
The following BLAST results are available for this feature:
BLAST of CV712657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_SALTO1.625e-3560.00NADH-quinone oxidoreductase subunit B 1 OS=Salinis... [more]
NUOB1_SALAI1.625e-3560.00NADH-quinone oxidoreductase subunit B 1 OS=Salinis... [more]
NQO6_PARDE1.625e-3551.16NADH-quinone oxidoreductase subunit 6 OS=Paracoccu... [more]
NDUS7_NEUCR1.625e-3551.59NADH-ubiquinone oxidoreductase 19.3 kDa subunit, m... [more]
NUOB_SPHAL2.123e-3550.39NADH-quinone oxidoreductase subunit B OS=Sphingopy... [more]
NUOB_ROSDO2.123e-3551.16NADH-quinone oxidoreductase subunit B OS=Roseobact... [more]
NUOB_RICBR2.123e-3548.59NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICAH2.123e-3548.59NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RHILW2.123e-3549.61NADH-quinone oxidoreductase subunit B OS=Rhizobium... [more]
NUOB_RHIL32.123e-3549.61NADH-quinone oxidoreductase subunit B OS=Rhizobium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712657 ID=CV712657; Name=CV712657; organism=Citrus sinensis; type=EST; length=802bp
GCATCTATAACGAGCCTCTGGTTTAGGCGGGCAACCCGGCAAATAAACAT
CCACGGGAATTAGCTTATCAACTCCTCGAACAGTACTATACGAATCGGTA
CTGAACATCCCCCCTGTAATTGTACATGCTCCCATAGCAATAACATATTT
TGGTTCAGGCATTTGTTCATATAATCTCACTAAAGAAGGAGCCATTTTCA
TTGTTACTGTACCAGCTGTTAAAATTAGGTCCGCCTGTCTAGGGCTCGAT
CTTGGTACCAGCCCATAACGGTCAAAATCGAACCGCGAGCCGATTAATGA
AGCAAATTCAATGAAACAACAACTGGTACCATAAAGAAGCGGCCATAAGC
TGGAGAGTCTTGACCAATTTGAAAGATCGTTTGATGTAGTTGAAATAAAT
GAATTTGGGGTTGTTCGATCAAGTAAGGAAAATTCAATAGAATTCATAAT
TCTCTCAATGTTATTTTTTGTTTTTTTTTTTTTTTTTACTTTTTTGTTAT
TGTCTGAATATTCAGAAACTAAGACCACTCTAATGCTCCTTTTCGCCACG
CATAAACTAAACCAACAATTAGGATAAGCATGAAAATGAAAGCTTCTATA
AATACGGGTACCCCCAATACATCAAAACTCATTGCCCATGGATAAAGAAA
AACGGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACATATAATACC
GGATTCGAAAATTGTAACCAAGCATCGCCCATTGGTTCGATACCCGATTC
ATAACTAGAAAGTTTCTCTGGCCCTTTGTTAATCGGGGCTAAAACTGCGG
AA
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