CV712657

Overview
NameCV712657
Unique NameCV712657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_STAPU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Staurastrum punctulatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.009e-69
Identity = 126/148 (85.14%), Postives = 134/148 (90.54%), Query Frame = -2
Query:   13 ERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 456
            E + N + FS+ +    +S I TT +D +NW RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA
Sbjct:   20 ESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 167          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_PSINU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Psilotum nudum GN=ndhK PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.538e-69
Identity = 125/145 (86.21%), Postives = 132/145 (91.03%), Query Frame = -2
Query:   13 MNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 447
            +N +E  +    T NS I T  ND SNW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSL+RLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA
Sbjct:    5 INPMESLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEA 149          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_CHAGL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chaetosphaeridium globosum GN=ndhK PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.538e-69
Identity = 126/148 (85.14%), Postives = 133/148 (89.86%), Query Frame = -2
Query:   13 ERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 456
            + I N ++ S       NS I TT ND SNW+RLSSLWPLLYGTSCCFIEFA+LIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA
Sbjct:   19 DSIKNPVKTSSDKEELSNSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEA 166          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_CHAVU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chara vulgaris GN=ndhK PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.441e-68
Identity = 125/146 (85.62%), Postives = 133/146 (91.10%), Query Frame = -2
Query:   13 IMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 450
            ++NS E    ++    S I TT NDL+NW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQM EPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV+VYLPGCPPKPEA
Sbjct:   23 LINSTERLTTNQILSTSVILTTMNDLTNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEA 168          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_ZYGCR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Zygnema circumcarinatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.610e-67
Identity = 125/146 (85.62%), Postives = 131/146 (89.73%), Query Frame = -2
Query:   13 IMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 450
            I N +  S   +   +S + TT  D+SNW RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA
Sbjct:    4 ISNPMGLSPTKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 149          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_MESVI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Mesostigma viride GN=ndhK PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.610e-67
Identity = 125/149 (83.89%), Postives = 134/149 (89.93%), Query Frame = -2
Query:   13 ERIMN-SIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 456
            ER++N +IE   + +   N  I TT NDL NW+RLSSLWPLLYGTSCCFIEFA L+GSRFDFDR+GLVPR SPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA
Sbjct:   18 ERLINYNIEKPQVTQNVSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 166          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_CHLAT (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chlorokybus atmophyticus GN=ndhK PE=3 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.103e-67
Identity = 122/131 (93.13%), Postives = 126/131 (96.18%), Query Frame = -2
Query:   13 NSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 405
            N  I TT NDL NW+RLSSLWPLLYGTSCCFIEFASL+GSRFDFDR+GLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA
Sbjct:   62 NQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 192          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_NEPOL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis olivacea GN=ndhK PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.120e-67
Identity = 122/142 (85.92%), Postives = 130/142 (91.55%), Query Frame = -2
Query:   13 IEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 438
            +  S + +   N+ I TT NDL NW+RLSSLWPLLYGTSCCFIEFA LIGSRFDFDR+GLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMP+PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA
Sbjct:   16 VSSSPITQELANNLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 157          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK_ADICA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Adiantum capillus-veneris GN=ndhK PE=2 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 3.037e-66
Identity = 121/144 (84.03%), Postives = 129/144 (89.58%), Query Frame = -2
Query:   13 NSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 444
            NS+    L     +S    + +D SNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGT+TMKMAPSL+RLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA
Sbjct:   26 NSMSKLPLQGGMSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEA 169          
BLAST of CV712657 vs. ExPASy Swiss-Prot
Match: NDHK1_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloeobacter violaceus GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.507e-65
Identity = 117/149 (78.52%), Postives = 133/149 (89.26%), Query Frame = -2
Query:   13 IERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA 459
            I+ ++N IE   +     N+ + TT NDL NW+RLSS+WPL+YGTSCCFIEFA LIGSRFDFDR+GLVPR+SPRQADLI+TAGTVTMKMAP+LV LYEQMPEPKYVIAMGACTITGGMFSTDSY+TVRGVDKLIPVDVY+PGCPP+PEA
Sbjct:    3 IKNLLNPIERPEVTSELTNNVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYIPGCPPRPEA 151          
The following BLAST results are available for this feature:
BLAST of CV712657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_STAPU1.009e-6985.14NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_PSINU6.538e-6986.21NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHAGL6.538e-6985.14NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHAVU9.441e-6885.62NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ZYGCR1.610e-6785.62NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_MESVI1.610e-6783.89NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHLAT2.103e-6793.13NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_NEPOL6.120e-6785.92NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ADICA3.037e-6684.03NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK1_GLOVI1.507e-6578.52NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712657 ID=CV712657; Name=CV712657; organism=Citrus sinensis; type=EST; length=802bp
GCATCTATAACGAGCCTCTGGTTTAGGCGGGCAACCCGGCAAATAAACAT
CCACGGGAATTAGCTTATCAACTCCTCGAACAGTACTATACGAATCGGTA
CTGAACATCCCCCCTGTAATTGTACATGCTCCCATAGCAATAACATATTT
TGGTTCAGGCATTTGTTCATATAATCTCACTAAAGAAGGAGCCATTTTCA
TTGTTACTGTACCAGCTGTTAAAATTAGGTCCGCCTGTCTAGGGCTCGAT
CTTGGTACCAGCCCATAACGGTCAAAATCGAACCGCGAGCCGATTAATGA
AGCAAATTCAATGAAACAACAACTGGTACCATAAAGAAGCGGCCATAAGC
TGGAGAGTCTTGACCAATTTGAAAGATCGTTTGATGTAGTTGAAATAAAT
GAATTTGGGGTTGTTCGATCAAGTAAGGAAAATTCAATAGAATTCATAAT
TCTCTCAATGTTATTTTTTGTTTTTTTTTTTTTTTTTACTTTTTTGTTAT
TGTCTGAATATTCAGAAACTAAGACCACTCTAATGCTCCTTTTCGCCACG
CATAAACTAAACCAACAATTAGGATAAGCATGAAAATGAAAGCTTCTATA
AATACGGGTACCCCCAATACATCAAAACTCATTGCCCATGGATAAAGAAA
AACGGTTTCAACATCAAAAACAACAAAAACTAGAGCAAACATATAATACC
GGATTCGAAAATTGTAACCAAGCATCGCCCATTGGTTCGATACCCGATTC
ATAACTAGAAAGTTTCTCTGGCCCTTTGTTAATCGGGGCTAAAACTGCGG
AA
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