CV712646

Overview
NameCV712646
Unique NameCV712646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_DAUCA (Cytochrome c oxidase subunit 2 OS=Daucus carota GN=COX2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.520e-15
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 3 
Query:  606 FLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            F T +PCDAAEPWQLG QDAATPMMQGIIDLHHDIFFFLIL
Sbjct:    9 FFTNSPCDAAEPWQLGSQDAATPMMQGIIDLHHDIFFFLIL 49
[Close]
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_VIGUN (Cytochrome c oxidase subunit 2, mitochondrial (Fragment) OS=Vigna unguiculata GN=COX2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 3 
Query:  576 QMIVRLLEWL---FLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLI 725
            + I R L W+   F  IA CDA EPWQLGFQDAATP+MQGI+DLHHDIFFFL+
Sbjct:  117 EKIPRALRWMCGGFPAIALCDAPEPWQLGFQDAATPIMQGIMDLHHDIFFFLV 169
[Close]
BLAST of CV712646 vs. ExPASy Swiss-Prot
Match: COX2_MARPO (Cytochrome c oxidase subunit 2 OS=Marchantia polymorpha GN=COX2 PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:  594 LEWLFLTIAPCDAAEPWQLGFQDAATPMMQGIIDLHHDIFFFLIL 728
            L W+F  IA CDAAEPWQLGFQD ATPMMQGIIDLH+DIFFFLI+
Sbjct:    3 LIWIF-PIAFCDAAEPWQLGFQDPATPMMQGIIDLHNDIFFFLIV 46
The following BLAST results are available for this feature:
BLAST of CV712646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COX2_DAUCA3.520e-1590.24Cytochrome c oxidase subunit 2 OS=Daucus carota GN... [more]
COX2_VIGUN2.282e-1469.81Cytochrome c oxidase subunit 2, mitochondrial (Fra... [more]
COX2_MARPO8.670e-1482.22Cytochrome c oxidase subunit 2 OS=Marchantia polym... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712646 ID=CV712646; Name=CV712646; organism=Citrus sinensis; type=EST; length=730bp
CAAGCTTTCCTTGTTTAGTATTTGCTCTTGATTTGTTCTTGAAAATGGTC
AACTCGACGTGGCCAGCTCATCTGAAAAGTAAATTATTTCATATTTTGGT
TATTACGAGAAGGCAGCCCCTAACCTTAAGGGAAGCCGAGAACCTGTGTG
ATCACTACCATAGCACTACTACAGCCTCTTGGCCGTTTACTAATGGAAAG
GAGTCTTAGTCTTGGTCTAACCATCTGGAATGGTCAGGGCACTCTTGCCA
TTGCCATATTCATGTTGGTGTGGTTTACACTAGTGCTGATGCAATATTGT
TGTCTTTATAGAGCTAGGAGTCACTCTTTTCACTTGAAAGGAAGAGGAAC
AGCCCTTCCCGCCCTTACAACCCGATTTGGCGAAATAAAGAATATCATAT
AAGAACAAAACGCCCGATTTGGCAAAGAAAAAGCTGACTGAGTGTTCATT
AATGCCCAAAACTCCCATGCCTTTCTTGGTTGGACCAAGGCGATTTCTGT
CTTCCTGAATTGGGATAGTAAGAGTCAGTCTCTCTTTTTTGGGGGGGAGC
AGAGCAGTCAAAGAATGAAGCAAAGCAAATGATTGTTCGTTTACTAGAAT
GGTTATTCCTTACAATTGCTCCTTGTGATGCAGCGGAACCGTGGCAATTA
GGATTTCAAGACGCAGCAACACCTATGATGCAAGGAATAATAGACTTACA
TCACGATATCTTTTTCTTTCTCATTCTGAT
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