CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_WHEAT (Cytochrome c oxidase subunit 2 OS=Triticum aestivum GN=COX2 PE=2 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 3.939e-90
Identity = 160/180 (88.89%), Postives = 168/180 (93.33%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L +LVRALWHF+ + NPIPQRIVHGTTIEI+WTIFPS+IL+FIAIPSFALLYSMD V+VDPAITIKAIGHQWYWTYEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTHLR+IVT ADVLHSWAVPSLGVKCDAVPGRLN  SI VQREGVYYGQCSEICGTNHAFM
Sbjct:   56 LWMLVRALWHFNEQTNPIPQRIVHGTTIEIIWTIFPSVILLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRMIVTPADVLHSWAVPSLGVKCDAVPGRLNLTSILVQREGVYYGQCSEICGTNHAFM 235          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ORYSJ (Cytochrome c oxidase subunit 2 OS=Oryza sativa subsp. japonica GN=COX2 PE=3 SV=4)

HSP 1 Score: 313.538 bits (802), Expect = 8.500e-85
Identity = 154/178 (86.52%), Postives = 163/178 (91.57%), Query Frame = -3
Query:  266 RILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAF 799
            R+LVRALWHF+ + NPIPQRIVHGTTIEI+ TIFPS+I +FIAIPSFALLYSMD V+VDPAITIKAIGHQWY +YEYSDYNSSDEQSL FDSY IPEDD ELGQ RLLEVDNRVVVPAKTHLR+IVT ADVLHSWAVPS GVKCDAVPGR N  SISVQREGVYYGQCSEICGTNHAF
Sbjct:   57 RMLVRALWHFNEQTNPIPQRIVHGTTIEIIRTIFPSVIPLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYRSYEYSDYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRMIVTPADVLHSWAVPSSGVKCDAVPGRSNLTSISVQREGVYYGQCSEICGTNHAF 234          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CHOCR (Cytochrome c oxidase subunit 2 OS=Chondrus crispus GN=COX2 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.408e-71
Identity = 118/178 (66.29%), Postives = 148/178 (83.15%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            +L R LWHF   +N IP  + HGT IE++WT+ P+ IL+ IA+PSF+LLY+MDE++  PAITIK +GHQWYW+YEYSDY + D+ S+ +DSYMIPE+DLE+GQ RLLEVDNR+V+P  TH+R+IVT+ADVLHSWAVPS   KCDA+PGRLNQ S+ ++REGVYYGQCSEICG NH FM
Sbjct:   56 MLGRTLWHFEQNQNKIPSSLTHGTLIEMIWTVTPAFILLIIAVPSFSLLYAMDEII-SPAITIKTLGHQWYWSYEYSDYLNEDDDSINYDSYMIPEEDLEIGQFRLLEVDNRMVIPINTHIRVIVTAADVLHSWAVPSFRSKCDAIPGRLNQTSLFIKREGVYYGQCSEICGINHGFM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CYACA (Cytochrome c oxidase subunit 2 OS=Cyanidium caldarium GN=COX2 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.349e-71
Identity = 120/178 (67.42%), Postives = 149/178 (83.71%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            IL R L+ F+ K NP+     HGT IE+LWT+ PS++L+ IA+PSFALLYS+DE++ DPAITIKA+G QWYW+YEYSDY + + + L F SY++PE+DLELGQ RLLEVDNR+++P  TH+RIIVT ADV+HSWAVPSLGVKCDA+PGRLNQIS  ++REG+YYGQCSEICG NH FM
Sbjct:   57 ILFRTLFLFNSKTNPVAYNFSHGTFIELLWTLTPSLVLIGIAVPSFALLYSIDEII-DPAITIKAVGRQWYWSYEYSDYVNEENEFLAFHSYILPEEDLELGQFRLLEVDNRIIIPVNTHIRIIVTGADVIHSWAVPSLGVKCDAIPGRLNQISFFIKREGIYYGQCSEICGVNHGFM 233          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PHYME (Cytochrome c oxidase subunit 2 OS=Phytophthora megasperma GN=COX2 PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.044e-66
Identity = 115/178 (64.61%), Postives = 144/178 (80.90%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            +L R +  F  KKN IP  +VHG TIEI+WT  P++IL+ +A+PSFALLYSMDEV+ DP IT+K IG QWYW+YEYSD     ++ LIFDSYMI EDDL +GQ R+LEVDNRVVVP  +H+R+++T++DVLHSWA+PSLG+K DA PGRLNQ S+ ++REGV+YGQCSEICG NH FM
Sbjct:   56 MLFRVITLFDEKKNKIPATVVHGATIEIIWTSIPALILLTVAVPSFALLYSMDEVI-DPIITLKVIGSQWYWSYEYSDNLEFSDEPLIFDSYMIQEDDLAIGQFRILEVDNRVVVPTNSHIRVLITASDVLHSWAIPSLGIKLDACPGRLNQTSMFIKREGVFYGQCSEICGVNHGFM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX1_DICCI (Cytochrome c oxidase subunit 1+2 OS=Dictyostelium citrinum GN=cox1/2 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 4.248e-60
Identity = 112/191 (58.64%), Postives = 141/191 (73.82%), Query Frame = -3
Query:  263 ILVRALWHFHYK------------KN-PIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            ++ R LW F YK            KN     +I+HGT IEI+WT+ P++IL  IAIPSF LLY+MDE++ +P +TIK IGHQWYW+YEY D +S+  +   FDSYM+ E DL  GQLRLLEVDN ++VP KTH+R+I+TS DVLHSWAVPS G+K DAVPGRLNQI + V+REG +YGQCSE+CG +H FM
Sbjct:  569 VMGRILWRFAYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEII-NPTVTIKIIGHQWYWSYEYGDNSSNLVE---FDSYMVYERDLNEGQLRLLEVDNSMIVPVKTHIRLIITSGDVLHSWAVPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFM 755          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX1_DICDI (Cytochrome c oxidase subunit 1+2 OS=Dictyostelium discoideum GN=cox1/2 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.246e-60
Identity = 112/191 (58.64%), Postives = 140/191 (73.30%), Query Frame = -3
Query:  263 ILVRALWHFHYK------------KN-PIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            ++ R LW F YK            KN     +I+HGT IEI+WT+ P++IL  IAIPSF LLY+MDE++ +P +TIK IGHQWYW+YEY D  S+    + FDSYM+ E DL  GQLRLLEVDN +VVP KTH+R+I+TS DVLHSWA+PS G+K DAVPGRLNQI + V+REG +YGQCSE+CG +H FM
Sbjct:  559 VMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEII-NPTVTIKIIGHQWYWSYEYGDNASN---LIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFM 745          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PNECA (Cytochrome c oxidase subunit 2 OS=Pneumocystis carinii PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.753e-59
Identity = 107/157 (68.15%), Postives = 128/157 (81.53%), Query Frame = -3
Query:  263 HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 733
            H TTIE +WT+ P+++L+ IA PSF LLY MDEV+ DP+ITIKAIGHQWYW+YEYSDY   + QS+ FDSYM+P +DLE GQLR LEVDNRV+VP  T LR I+T+ DVLH +AVPSLG+K DA PGRLNQ+S  VQREGVYYGQCSE+CG  H+ M
Sbjct:   69 HSTTIEFVWTVSPALLLIAIAFPSFKLLYLMDEVI-DPSITIKAIGHQWYWSYEYSDYTDKEGQSIEFDSYMLPTEDLEEGQLRQLEVDNRVLVPVNTPLRFIITATDVLHDFAVPSLGIKVDASPGRLNQVSTYVQREGVYYGQCSELCGVLHSSM 224          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_USTMA (Cytochrome c oxidase subunit 2 OS=Ustilago maydis GN=COX2 PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.696e-59
Identity = 108/181 (59.67%), Postives = 140/181 (77.35%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            L +L   + +F+  K+ +  +   HGT IE++WTI P+++L+ IA PSF LLY MDEV+  P++T+K  GHQWYW+ EYSD+ + D +S+ FDSYM+PE DLE GQLRLLEVDNR+VVP  TH+R IVT ADV+H +AVPSLG+K DAVPGRLNQ S+ ++REGV+YGQCSEICG  H FM
Sbjct:   56 LWVLSSVIVNFNSNKSQLVYKYANHGTLIELIWTITPALVLIAIAFPSFKLLYLMDEVI-SPSMTVKVAGHQWYWSAEYSDFINEDGESIEFDSYMVPETDLEDGQLRLLEVDNRMVVPIDTHIRFIVTGADVIHDFAVPSLGLKIDAVPGRLNQTSVLIEREGVFYGQCSEICGVYHGFM 235          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_KLULA (Cytochrome c oxidase subunit 2 OS=Kluyveromyces lactis GN=COX2 PE=3 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 107/169 (63.31%), Postives = 135/169 (79.88%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNPI  + + HG TIEI+WTIFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ + + +++ F+SY+IPED LE GQLRLL+ D  VVVP  TH+R +VT+ADV+H +AVPSLG+K DA PGRLNQ+S  +QREGV+YGQCSEICG +H+ M
Sbjct:   61 YSKNPIAYKYIKHGQTIEIIWTIFPAVILLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINDNGETVEFESYVIPEDLLEDGQLRLLDTDTSVVVPVDTHIRFVVTAADVIHDFAVPSLGIKIDAAPGRLNQVSALIQREGVFYGQCSEICGQSHSAM 228          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_WHEAT3.939e-9088.89Cytochrome c oxidase subunit 2 OS=Triticum aestivu... [more]
COX2_ORYSJ8.500e-8586.52Cytochrome c oxidase subunit 2 OS=Oryza sativa sub... [more]
COX2_CHOCR1.408e-7166.29Cytochrome c oxidase subunit 2 OS=Chondrus crispus... [more]
COX2_CYACA5.349e-7167.42Cytochrome c oxidase subunit 2 OS=Cyanidium caldar... [more]
COX2_PHYME1.044e-6664.61Cytochrome c oxidase subunit 2 OS=Phytophthora meg... [more]
COX1_DICCI4.248e-6058.64Cytochrome c oxidase subunit 1+2 OS=Dictyostelium ... [more]
COX1_DICDI7.246e-6058.64Cytochrome c oxidase subunit 1+2 OS=Dictyostelium ... [more]
COX2_PNECA2.753e-5968.15Cytochrome c oxidase subunit 2 OS=Pneumocystis car... [more]
COX2_USTMA4.696e-5959.67Cytochrome c oxidase subunit 2 OS=Ustilago maydis ... [more]
COX2_KLULA1.366e-5863.31Cytochrome c oxidase subunit 2 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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