CV712645 | Citrus Genome Database

Overview


Name	CV712645
Unique Name	CV712645
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	804

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_BISBI (Cytochrome c oxidase subunit 2 OS=Bison bison GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+KA+GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLLEVDNRVV+P +  +R++V+S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-NPFLTVKAMGHQWYWSYEYTDY-----EDLSFDSYMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ARVSO (Cytochrome c oxidase subunit 2 OS=Arvicanthis somalicus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52
Identity = 92/153 (60.13%), Postives = 123/153 (80.39%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSW VPSLG+K DA+PGRLNQ ++S  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAAILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWTVPSLGLKTDAIPGRLNQATLSSNRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ACOIG (Cytochrome c oxidase subunit 2 OS=Acomys ignitus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.260e-52
Identity = 93/153 (60.78%), Postives = 123/153 (80.39%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM P  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +IS  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAAILVLIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLYFDSYMTPTSDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATISSNRPGLFYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_VULZE (Cytochrome c oxidase subunit 2 OS=Vulpes zerda GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 92/153 (60.13%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILVLIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TARSY (Cytochrome c oxidase subunit 2 OS=Tarsius syrichta GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 92/153 (60.13%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILILIALPSLRILYMMDEIN-NPLLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMVPTTDLKPGELRLLEVDNRVVLPMEVPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLTSTRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SPEVE (Cytochrome c oxidase subunit 2 OS=Speothos venaticus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 92/153 (60.13%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILVLIALPSLRILYMMDEIN-NPSLTVKTLGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMATRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PHOVI (Cytochrome c oxidase subunit 2 OS=Phoca vitulina GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 92/153 (60.13%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMTMRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MICTV (Cytochrome c oxidase subunit 2 OS=Microcebus tavaratra GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 91/153 (59.48%), Postives = 121/153 (79.08%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     +SL FDSYM P  +L+ G+LRLLEVDNRVV+P +  +R++++S DVLHSW VPSLGVK DA+PGRLNQ ++   R G+YYGQCSEICG NH+FM
Sbjct:   61 VETVWTILPAVILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ESLCFDSYMTPPLELDPGELRLLEVDNRVVLPTEMSIRMLISSEDVLHSWTVPSLGVKTDAIPGRLNQATLMTSRPGIYYGQCSEICGANHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MACCA (Cytochrome c oxidase subunit 2 OS=Macrotus californicus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+TIK +GHQWYW+YEY+DY+      L FDSYM+P  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILITIALPSLRILYMMDEIN-NPAMTIKTMGHQWYWSYEYTDYHD-----LSFDSYMVPTSDLKPGELRLLEVDNRVVLPVEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLLSIRPGLYYGQCSEICGSNHSFM 207

[Close]

BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_LEOSA (Cytochrome c oxidase subunit 2 OS=Leopoldamys sabanus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.258e-52
Identity = 91/153 (59.48%), Postives = 124/153 (81.05%), Query Frame = -3

Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207

The following BLAST results are available for this feature:

BLAST of CV712645 vs. ExPASy Swiss-Prot

BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312


Match Name	E-value	Identity	Description
COX2_BISBI	3.260e-52	61.44	Cytochrome c oxidase subunit 2 OS=Bison bison GN=M...	[more]
COX2_ARVSO	3.260e-52	60.13	Cytochrome c oxidase subunit 2 OS=Arvicanthis soma...	[more]
COX2_ACOIG	3.260e-52	60.78	Cytochrome c oxidase subunit 2 OS=Acomys ignitus G...	[more]
COX2_VULZE	4.258e-52	60.13	Cytochrome c oxidase subunit 2 OS=Vulpes zerda GN=...	[more]
COX2_TARSY	4.258e-52	60.13	Cytochrome c oxidase subunit 2 OS=Tarsius syrichta...	[more]
COX2_SPEVE	4.258e-52	60.13	Cytochrome c oxidase subunit 2 OS=Speothos venatic...	[more]
COX2_PHOVI	4.258e-52	60.13	Cytochrome c oxidase subunit 2 OS=Phoca vitulina G...	[more]
COX2_MICTV	4.258e-52	59.48	Cytochrome c oxidase subunit 2 OS=Microcebus tavar...	[more]
COX2_MACCA	4.258e-52	61.44	Cytochrome c oxidase subunit 2 OS=Macrotus califor...	[more]
COX2_LEOSA	4.258e-52	59.48	Cytochrome c oxidase subunit 2 OS=Leopoldamys saba...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA