CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CANGA (Cytochrome c oxidase subunit 2 OS=Candida glabrata GN=COX2 PE=3 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.366e-58
Identity = 104/169 (61.54%), Postives = 135/169 (79.88%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNP+  + + HG TIEI+WT+FP++IL+ IA PSF LLY  DEV+  PA+TIKAIG+QWYW YEYSD+ + + +++ F+SY+IP+D LE GQLRLL+ D  VVVP  TH+R +VT ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGV+YGQCSE+CG NHA M
Sbjct:   65 YSKNPMAYKYIKHGQTIEIIWTMFPAVILLIIAFPSFILLYLCDEVI-SPAMTIKAIGYQWYWKYEYSDFINDNGETIEFESYVIPDDLLEEGQLRLLDTDTSVVVPVDTHIRFVVTGADVIHDFAIPSLGIKVDANPGRLNQVSALIQREGVFYGQCSELCGVNHAAM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_LACTH (Cytochrome c oxidase subunit 2 OS=Lachancea thermotolerans GN=COX2 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.785e-58
Identity = 106/169 (62.72%), Postives = 134/169 (79.29%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNPI  + + HG TIEI+WTIFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL+ D  VVVP  TH+R +VT+ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGV+YGQCSE+CGT H+ M
Sbjct:   65 YSKNPIAYKYIKHGQTIEIIWTIFPAVILLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINDSGETVEFESYVIPEDLLEDGQLRLLDTDTSVVVPVDTHIRFVVTAADVIHDFAIPSLGIKVDAAPGRLNQVSALIQREGVFYGQCSELCGTAHSAM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SACKL (Cytochrome c oxidase subunit 2 OS=Saccharomyces kluyveri GN=COX2 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.331e-58
Identity = 105/169 (62.13%), Postives = 134/169 (79.29%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNPI  + + HG TIEI+WTIFP+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL+ D  VVVP  TH+R +VT+ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGV+YGQCSE+CGT H+ M
Sbjct:   65 YSKNPIAYKYIKHGQTIEIIWTIFPAVVLLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINESGETVEFESYVIPEDLLEDGQLRLLDTDTSVVVPVDTHIRFVVTAADVIHDFAIPSLGIKVDATPGRLNQVSALIQREGVFYGQCSELCGTAHSAM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_YARLI (Cytochrome c oxidase subunit 2 OS=Yarrowia lipolytica GN=COX2 PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.193e-58
Identity = 104/159 (65.41%), Postives = 127/159 (79.87%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            + HGTT+EI+WTIFP +IL+FIA PSF LLY  DEV+ DPA+TIKAI  QWYWTYEYSD+     + + FDSY++P D LE GQLR+L+VD R+VVP  THLR IVTS DV+H +A+PSLG+KCDA PGRLNQ+S  +QRE VYYGQCSE+CG  H+ M
Sbjct:   66 LTHGTTLEIVWTIFPVVILLFIAFPSFILLYLCDEVI-DPAMTIKAIASQWYWTYEYSDFIGETGEIVQFDSYIVPTDMLENGQLRMLDVDARIVVPTNTHLRFIVTSRDVIHDFALPSLGIKCDATPGRLNQVSALLQRESVYYGQCSELCGVLHSSM 223          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SCHPO (Cytochrome c oxidase subunit 2 OS=Schizosaccharomyces pombe GN=cox2 PE=3 SV=4)

HSP 1 Score: 223.787 bits (569), Expect = 8.857e-58
Identity = 96/178 (53.93%), Postives = 141/178 (79.21%), Query Frame = -3
Query:  263 LVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 793
            + +A+  ++Y  +PI  +   HG+ +E +WT+ P++IL+ +A+PSF LLY +DEV   P++T+KAIG QW+WTYE +D+ +++ + + FDSYM+PE+DLE G LR LEVDNR+V+P  T +R+I+TS DV+HSWAVPSLG+KCD +PGRLNQ+S+S+ REG++YGQCSE+CG  H+ M
Sbjct:   52 ICKAVIEYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQ-KPSMTVKAIGRQWFWTYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPSLGIKCDCIPGRLNQVSLSIDREGLFYGQCSELCGVLHSSM 228          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_YEAST (Cytochrome c oxidase subunit 2 OS=Saccharomyces cerevisiae GN=COX2 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 102/169 (60.36%), Postives = 134/169 (79.29%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNPI  + + HG TIE++WTIFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG+QWYW YEYSD+ +   +++ F+SY+IP++ LE GQLRLL+ D  +VVP  TH+R +VT+ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGV+YG CSE+CGT HA M
Sbjct:   65 YSKNPIAYKYIKHGQTIEVIWTIFPAVILLIIAFPSFILLYLCDEVI-SPAMTIKAIGYQWYWKYEYSDFINDSGETVEFESYVIPDELLEEGQLRLLDTDTSMVVPVDTHIRFVVTAADVIHDFAIPSLGIKVDATPGRLNQVSALIQREGVFYGACSELCGTGHANM 232          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_VANPO (Cytochrome c oxidase subunit 2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=COX2 PE=3 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 102/169 (60.36%), Postives = 135/169 (79.88%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y KNP+P + + HG  IEI+WTIFP+++L+ IA PSF LLY  DEV+  PA+T+K IG+QWYW YEYSD+ +S+ +++ F+SY+IP+D LE GQLRLL+ D  VVVP  TH+R IVT+ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGV+YG CSE+CGT H+ M
Sbjct:   63 YSKNPLPYKYMKHGQFIEIIWTIFPAVVLLIIAFPSFILLYLCDEVI-SPAMTVKVIGYQWYWKYEYSDFVNSNGETVEFESYIIPDDLLEEGQLRLLDTDTSVVVPVDTHIRFIVTAADVIHDFAIPSLGIKVDANPGRLNQVSALIQREGVFYGMCSELCGTGHSQM 230          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_METSE (Cytochrome c oxidase subunit 2 OS=Metridium senile GN=COII PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.741e-57
Identity = 103/159 (64.78%), Postives = 128/159 (80.50%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            +V GT +EI+WTI P+IIL+ IA PS  LLY MDEV+ DPA+TIKAIGHQWYW+YEYSDY +   ++L FDSYM+P  +L  G  RLLEVDNR+VVP  TH+R++VT ADVLHS+AVP+L VK DA+PGRLNQ    ++R G++YGQCSEICG NH+FM
Sbjct:   72 LVDGTLLEIIWTIVPAIILILIAFPSLKLLYLMDEVM-DPALTIKAIGHQWYWSYEYSDYQT---ETLEFDSYMVPTSELNKGDFRLLEVDNRLVVPINTHVRVLVTGADVLHSFAVPALAVKMDAIPGRLNQTGFFIKRPGIFYGQCSEICGANHSFM 226          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PODAN (Cytochrome c oxidase subunit 2 OS=Podospora anserina GN=COII PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.279e-56
Identity = 101/179 (56.42%), Postives = 140/179 (78.21%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            IL+  + ++   K+PI  + + HGT IE++WTI P++IL+ IA PSF LLY MDEV  DP++++ A GHQWYW+Y+Y D+  S++Q + FDSY++PE DL+ G LR+LEVDNRVV+P  TH+R I+T+ DV+HS+A P+LG+KCDA PGRLNQ+S+ + REGV+YGQCSEICG  H+ M
Sbjct:   54 ILLSIVINYVSTKSPISHKYLNHGTLIELIWTITPAVILILIAFPSFKLLYLMDEVS-DPSMSVLAEGHQWYWSYQYPDFLDSNDQFIEFDSYIVPESDLDEGGLRMLEVDNRVVLPELTHVRFIITAGDVIHSFAAPALGIKCDAYPGRLNQVSVFINREGVFYGQCSEICGILHSSM 231          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_WILMR (Cytochrome c oxidase subunit 2 OS=Williopsis mrakii GN=COX2 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.849e-56
Identity = 102/167 (61.08%), Postives = 130/167 (77.84%), Query Frame = -3
Query:  263 KNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 760
            KNP+P + +VHG TIEI+WTI P+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL+ D  VV P  TH+R IV++ADV+H +A+PSLG+K DA PGRLNQ+S  +QREGVYYG CSE CG  H+ M
Sbjct:   63 KNPLPHKYLVHGQTIEIIWTILPAVVLLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWRYEYSDFINDSGETIEFESYVIPEDLLEDGQLRLLDTDTSVVCPVNTHIRFIVSAADVIHDFAIPSLGIKVDACPGRLNQVSALIQREGVYYGMCSETCGVAHSAM 228          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_CANGA1.366e-5861.54Cytochrome c oxidase subunit 2 OS=Candida glabrata... [more]
COX2_LACTH1.785e-5862.72Cytochrome c oxidase subunit 2 OS=Lachancea thermo... [more]
COX2_SACKL2.331e-5862.13Cytochrome c oxidase subunit 2 OS=Saccharomyces kl... [more]
COX2_YARLI5.193e-5865.41Cytochrome c oxidase subunit 2 OS=Yarrowia lipolyt... [more]
COX2_SCHPO8.857e-5853.93Cytochrome c oxidase subunit 2 OS=Schizosaccharomy... [more]
COX2_YEAST1.157e-5760.36Cytochrome c oxidase subunit 2 OS=Saccharomyces ce... [more]
COX2_VANPO1.157e-5760.36Cytochrome c oxidase subunit 2 OS=Vanderwaltozyma ... [more]
COX2_METSE5.741e-5764.78Cytochrome c oxidase subunit 2 OS=Metridium senile... [more]
COX2_PODAN1.279e-5656.42Cytochrome c oxidase subunit 2 OS=Podospora anseri... [more]
COX2_WILMR2.849e-5661.08Cytochrome c oxidase subunit 2 OS=Williopsis mraki... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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