CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_RHAPU (Cytochrome c oxidase subunit 2 OS=Rhabdomys pumilio GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.760e-51
Identity = 89/153 (58.17%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYM P ++L+ G+LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAAILVLIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMTPTNELKPGELRLLEVDNRIVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PONAB (Cytochrome c oxidase subunit 2 OS=Pongo abelii GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.760e-51
Identity = 95/153 (62.09%), Postives = 119/153 (77.78%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL+VDNRVV+P +  +R+++TS DVLHSW VPSLG+K DA+PGRLNQ + +  R GVYYGQCSEICG NH+FM
Sbjct:   61 METIWTILPAIILILIALPSLRILYLTDEIN-DPSFTIKSIGHQWYWTYEYTDYGG-----LIFNSYMLPPLFLEPGDLRLLDVDNRVVLPVEAPVRMMITSQDVLHSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HYLSY (Cytochrome c oxidase subunit 2 OS=Hylobates syndactylus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.760e-51
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            I     +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIKAIGHQWYW YEY+DY       LIF+SYM+P   LE G LRLLEVDNRVV+P +  +R+++TS DVLHSW VPSLG+K DA+PGRLNQ + +  R GVYYGQCSEICG NH+FM
Sbjct:   55 ITDAQEMETVWTILPAIILVLIALPSLRILYLTDEIN-DPSFTIKAIGHQWYWAYEYTDYGG-----LIFNSYMLPPLFLEPGDLRLLEVDNRVVLPIEAPVRMMITSQDVLHSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HYLLA (Cytochrome c oxidase subunit 2 OS=Hylobates lar GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.760e-51
Identity = 97/159 (61.01%), Postives = 119/159 (74.84%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            I     +E +WTI P+IIL+ IA+PS  +LY  DE+  DP+ TIKAIGHQWYW YEY+DY       LIF+SYM+P   LE G LRLLEVDNRVV+P +  +R+++TS DVLHSW VPSLG+K DA+PGRLNQ + +  R GVYYGQCSEICG NH+FM
Sbjct:   55 ITDAQEMETVWTILPAIILVLIALPSLRILYLTDEIN-DPSFTIKAIGHQWYWAYEYTDYGG-----LIFNSYMLPPLFLEPGDLRLLEVDNRVVLPIEAPVRMMITSQDVLHSWTVPSLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_UROCA (Cytochrome c oxidase subunit 2 OS=Uromys caudimaculatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.604e-51
Identity = 90/153 (58.82%), Postives = 122/153 (79.74%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG NH+FM
Sbjct:   61 VETIWTILPAAILVLIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGDLRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PANPA (Cytochrome c oxidase subunit 2 OS=Pan paniscus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.604e-51
Identity = 95/153 (62.09%), Postives = 120/153 (78.43%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY  DEV  DP+ TIK+IGHQWYWTYEY+DY       LIF+SYM+P   LE G LRLL+VDNR+V+P +  +R+++TS DVLHSWAVP+LG+K DA+PGRLNQ + +  R GVYYGQCSEICG NH+FM
Sbjct:   61 METVWTILPAIILVLIALPSLRILYMTDEVN-DPSFTIKSIGHQWYWTYEYTDYGG-----LIFNSYMLPPLFLEPGDLRLLDVDNRLVLPVEAPVRMMITSQDVLHSWAVPTLGLKTDAIPGRLNQTTFTATRPGVYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_NYCCO (Cytochrome c oxidase subunit 2 OS=Nycticebus coucang GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.604e-51
Identity = 88/153 (57.52%), Postives = 121/153 (79.08%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY++     L FDSYM+   DLE G LRLLEVDNRV++P +  +R++++S DVLHSW VP+LG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAVILILIALPSLRILYMMDEINT-PSMTLKTMGHQWYWSYEYTDYDN-----LCFDSYMVTTPDLEPGDLRLLEVDNRVILPTEMSIRMLISSEDVLHSWTVPALGIKTDAIPGRLNQATLMTSRPGIYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HIPAM (Cytochrome c oxidase subunit 2 OS=Hippopotamus amphibius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.604e-51
Identity = 91/153 (59.48%), Postives = 122/153 (79.74%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G LRLLEVDNRVV+P    +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G++YGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMVPTSDLKPGDLRLLEVDNRVVLPMDVTVRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_EENNA (Cytochrome c oxidase subunit 2 OS=Eeniella nana GN=COX2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.604e-51
Identity = 96/169 (56.80%), Postives = 127/169 (75.15%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y K+ +  + + HG  +E++WT FP+++L+ +A PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SYMIPED LE GQLR+L+VD  VV P  TH+R +VTSADV+H + +PSLG+K DA PGRLNQ S  +QREGVYYGQCSE+CG  H+ M
Sbjct:   61 YNKSAMAYKYMNHGQFMEMMWTTFPAMMLLMMAFPSFMLLYMCDEVMA-PAMTIKAMGLQWYWKYEYSDFMVEKGETMEFESYMIPEDLLEDGQLRMLDVDASVVCPVDTHMRFMVTSADVIHDFCMPSLGIKIDAAPGRLNQTSALMQREGVYYGQCSELCGVMHSSM 228          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TATEM (Cytochrome c oxidase subunit 2 OS=Taterillus emini GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.707e-51
Identity = 91/165 (55.15%), Postives = 130/165 (78.79%), Query Frame = -3
Query:  263 RIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 742
            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+D+     + L FDSYMIP ++L+ G+LR LEVDNR+V+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R GV+YGQCSEICG+NH+FM
Sbjct:   49 KLIHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDF-----EDLSFDSYMIPTNELKPGELRQLEVDNRMVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGVFYGQCSEICGSNHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_RHAPU2.760e-5158.17Cytochrome c oxidase subunit 2 OS=Rhabdomys pumili... [more]
COX2_PONAB2.760e-5162.09Cytochrome c oxidase subunit 2 OS=Pongo abelii GN=... [more]
COX2_HYLSY2.760e-5161.01Cytochrome c oxidase subunit 2 OS=Hylobates syndac... [more]
COX2_HYLLA2.760e-5161.01Cytochrome c oxidase subunit 2 OS=Hylobates lar GN... [more]
COX2_UROCA3.604e-5158.82Cytochrome c oxidase subunit 2 OS=Uromys caudimacu... [more]
COX2_PANPA3.604e-5162.09Cytochrome c oxidase subunit 2 OS=Pan paniscus GN=... [more]
COX2_NYCCO3.604e-5157.52Cytochrome c oxidase subunit 2 OS=Nycticebus couca... [more]
COX2_HIPAM3.604e-5159.48Cytochrome c oxidase subunit 2 OS=Hippopotamus amp... [more]
COX2_EENNA3.604e-5156.80Cytochrome c oxidase subunit 2 OS=Eeniella nana GN... [more]
COX2_TATEM4.707e-5155.15Cytochrome c oxidase subunit 2 OS=Taterillus emini... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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