CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_NEUCR (Cytochrome c oxidase subunit 2 OS=Neurospora crassa GN=cox-2 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.849e-56
Identity = 101/179 (56.42%), Postives = 139/179 (77.65%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            IL+  + ++   K+PI  + + HGT IE++WTI P++IL+ IA PSF LLY MDEV  DP++++ A GHQWYW+Y+Y D+  S+++ + FDSY++PE DLE G LR+LEVDNRV++P  TH+R I+T+ DV+H +AVPSLGVKCDA P RLNQ+S+ + REGV+YGQCSEICG  H+ M
Sbjct:   54 ILLSIIRNYISTKSPISHKYLNHGTLIELIWTITPAVILILIAFPSFKLLYLMDEVS-DPSMSVLAEGHQWYWSYQYPDFLDSNDEFIEFDSYIVPESDLEEGALRMLEVDNRVILPELTHVRFIITAGDVIHDFAVPSLGVKCDAYPRRLNQVSVFINREGVFYGQCSEICGILHSSM 231          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PICCA (Cytochrome c oxidase subunit 2 OS=Pichia canadensis GN=COX2 PE=3 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 102/167 (61.08%), Postives = 131/167 (78.44%), Query Frame = -3
Query:  263 KNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 760
            KNP+P + +VHG TIEI+WTI P+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQL LL+ D  +V P  TH+R IV++ADV+H +AVPSLG+K DA PGRLNQ+S  +QREGVYYGQCSE+CG  H+ M
Sbjct:   63 KNPLPHKYLVHGQTIEIIWTILPALVLLVIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWKYEYSDFINDSGETIEFESYVIPEDLLEDGQLPLLDTDTSIVCPVNTHIRFIVSAADVIHDFAVPSLGIKIDACPGRLNQVSALIQREGVYYGQCSELCGVAHSAM 228          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_WILSA (Cytochrome c oxidase subunit 2 OS=Williopsis saturnus GN=COX2 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.114e-55
Identity = 101/167 (60.48%), Postives = 129/167 (77.25%), Query Frame = -3
Query:  263 KNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 760
            KNP+P + +VHG TIEI+WTI P+++L+ IA PSF LLY  DEV+  PA+TIKAIG QWYW YEYSD+ +   +++ F+SY+IPED LE GQLRLL+ D  VV P  TH+R IV++ADV+H +A+PSLG+K  A PGRLNQ+S  +QREGVYYG CSE CG  H+ M
Sbjct:   63 KNPLPHKYLVHGQTIEIIWTILPAVVLLIIAFPSFILLYLCDEVI-SPAMTIKAIGLQWYWRYEYSDFINDSGETIEFESYVIPEDLLEDGQLRLLDTDTSVVCPVNTHIRFIVSAADVIHDFAIPSLGIKVVASPGRLNQVSALIQREGVYYGMCSETCGVAHSAM 228          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TRIRU (Cytochrome c oxidase subunit 2 OS=Trichophyton rubrum GN=COX2 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.114e-55
Identity = 97/179 (54.19%), Postives = 136/179 (75.98%), Query Frame = -3
Query:  263 ILVRALWHFHYKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 796
            +++  +  F   K+PI  + + HGT IE++WTI P++IL+ IA PSF LLY MDEV+ DP++ I   GHQWYW+Y+Y D+ ++D + + FDSY++PE DLE G LR+LEVDNRV++P  TH R ++++ADV+HS+A PSLG+KCDA PGRLNQ S+ + R+G Y+GQCSEICG  H+ M
Sbjct:   45 MMITIIKSFVNTKSPISHKYMNHGTLIELIWTITPAVILILIAFPSFKLLYLMDEVM-DPSLVIYGEGHQWYWSYQYPDFTNADGEFVEFDSYIVPESDLEEGTLRMLEVDNRVIIPELTHTRFVISAADVIHSFACPSLGIKCDAYPGRLNQSSVYLNRQGTYFGQCSEICGILHSSM 222          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ANOQU (Cytochrome c oxidase subunit 2 OS=Anopheles quadrimaculatus GN=COXII PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 4.114e-55
Identity = 98/159 (61.64%), Postives = 126/159 (79.25%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            ++HG TIEI+WT+ P+IILMFIA+PS  LLY MDE+   P+IT+K++GHQWYW+YEYSD+      +L FDSYMIP ++LE    RLL+VDNRVV+P    +RI+VT+ DVLHSW VPSLGVK DA PGRLNQ++  + R G+++GQCSEICG NH+FM
Sbjct:   55 LLHGQTIEIIWTVLPAIILMFIALPSLRLLYLMDEINT-PSITLKSVGHQWYWSYEYSDF-----LNLEFDSYMIPTNELETNGFRLLDVDNRVVLPVNNQIRILVTATDVLHSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SACEX (Cytochrome c oxidase subunit 2 OS=Saccharomyces exiguus GN=COX2 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 98/169 (57.99%), Postives = 130/169 (76.92%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y +NP+  + + HG TIEI+W IFP++IL+ IA PSF LLY  DEV+  PA+TIKAIG+QWYW YEY D+ + + +++ F+SY+IP+  LE GQLRLL+ D  +VVP  TH+R IVT+ADV+H +A+PSLG+K D  PGRLNQ+S  +QREGV+YG CSE+CG  HA M
Sbjct:   63 YSRNPMAYKYIKHGQTIEIIWKIFPAVILLTIAFPSFILLYLCDEVI-SPAMTIKAIGYQWYWKYEYFDFINDNGETIEFESYVIPDSLLEEGQLRLLDTDTSIVVPVDTHIRFIVTAADVIHDFAIPSLGIKVDGTPGRLNQVSTLIQREGVFYGMCSELCGIGHAQM 230          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ANOGA (Cytochrome c oxidase subunit 2 OS=Anopheles gambiae GN=COII PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 98/159 (61.64%), Postives = 125/159 (78.62%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            ++HG TIEI+WT+ P+IILMFIA PS  LLY MDE+   P+IT+K+IGHQWYW+YEYSD+      +L FDSYM+P ++LE    RLL+VDNRVV+P    +RI+VT+ DVLHSW VPSLGVK DA PGRLNQ++  + R G+++GQCSEICG NH+FM
Sbjct:   55 LLHGQTIEIIWTVLPAIILMFIAFPSLRLLYLMDEINT-PSITLKSIGHQWYWSYEYSDF-----LNLEFDSYMVPTNELETNGFRLLDVDNRVVLPMNNQIRILVTATDVLHSWTVPSLGVKVDATPGRLNQLNFLINRPGLFFGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROYA (Cytochrome c oxidase subunit 2 OS=Drosophila yakuba GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.563e-54
Identity = 96/180 (53.33%), Postives = 136/180 (75.56%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L +   RLL+VDNRV++P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDEIN-EPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELAIDGFRLLDVDNRVILPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ASHGO (Cytochrome c oxidase subunit 2 OS=Ashbya gossypii GN=COX2 PE=3 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 97/169 (57.40%), Postives = 129/169 (76.33%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            YK NPI  + + HG  IEI+WTI P+IIL+ IA PSF LLY  DEV+  PA+TIK IG QWYW YEYSD+ + + +++ ++SYMIPE+ LE GQLR+L+ D  +V+P  TH+R IVT+ DV+H +AVPSLG+K D  PGRL+Q+S  +QREG++YGQCSE+CG  H+ M
Sbjct:   62 YKNNPITYKYIKHGQMIEIIWTILPAIILLMIAFPSFILLYLCDEVI-SPAMTIKVIGLQWYWKYEYSDFINDNGETIEYESYMIPEELLEEGQLRMLDTDTSIVIPVDTHVRFIVTATDVIHDFAVPSLGIKIDTTPGRLSQVSTLIQREGIFYGQCSELCGAQHSAM 229          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PISOC (Cytochrome c oxidase subunit 2 OS=Pisaster ochraceus GN=COII PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.667e-54
Identity = 97/158 (61.39%), Postives = 128/158 (81.01%), Query Frame = -3
Query:  263 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 736
            + G ++E +WT+ P++IL+FIA+PS  LLY +DEV  +P +TIKAIGHQWYW+YEY+DY     + L FDSYMIP +DL LG  RLLEVDNR+ +P++T +R++VTS+DVLHSW VPSLG+K DAVPGRLNQ++  + R G++YGQCSEICG NH+FM
Sbjct:   56 LEGQSLETIWTVIPAVILIFIALPSLQLLYLIDEVN-NPFLTIKAIGHQWYWSYEYADY-----RDLEFDSYMIPTNDLTLGNPRLLEVDNRLTLPSQTPIRVLVTSSDVLHSWTVPSLGIKMDAVPGRLNQVNFFISRCGLFYGQCSEICGANHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_NEUCR2.849e-5656.42Cytochrome c oxidase subunit 2 OS=Neurospora crass... [more]
COX2_PICCA3.721e-5661.08Cytochrome c oxidase subunit 2 OS=Pichia canadensi... [more]
COX2_WILSA4.114e-5560.48Cytochrome c oxidase subunit 2 OS=Williopsis satur... [more]
COX2_TRIRU4.114e-5554.19Cytochrome c oxidase subunit 2 OS=Trichophyton rub... [more]
COX2_ANOQU4.114e-5561.64Cytochrome c oxidase subunit 2 OS=Anopheles quadri... [more]
COX2_SACEX9.166e-5557.99Cytochrome c oxidase subunit 2 OS=Saccharomyces ex... [more]
COX2_ANOGA9.166e-5561.64Cytochrome c oxidase subunit 2 OS=Anopheles gambia... [more]
COX2_DROYA1.563e-5453.33Cytochrome c oxidase subunit 2 OS=Drosophila yakub... [more]
COX2_ASHGO2.042e-5457.40Cytochrome c oxidase subunit 2 OS=Ashbya gossypii ... [more]
COX2_PISOC2.667e-5461.39Cytochrome c oxidase subunit 2 OS=Pisaster ochrace... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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