CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_BACSU (Cytochrome c oxidase subunit 2 OS=Bacillus subtilis GN=ctaC PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.637e-11
Identity = 44/182 (24.18%), Postives = 81/182 (44.51%), Query Frame = -3 
Query:  263 KNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDP----------AITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISI------SVQREGVYYGQCSEICGTNHAFM 760
            +N IP+++     +EI WT+ P ++L+ + IP   +LY+++     P          A+ +    + ++W +EY DY     Q LI                          VP    +   + ++DV HS+ +PS+G K D      N+  +      S +   +++G+C+E+CG +HA M
Sbjct:   75 ENTIPKQVEGNKFLEITWTVIPILLLIILVIP--VVLYTLELADTSPMDKKGRKAEDALVVNVRANLYWWEFEYPDYGIITSQELI--------------------------VPTDQRVYFNLKASDVKHSFWIPSVGGKLDTNTDNENKFFLTFDSKRSKEAGDMFFGKCAELCGPSHALM 228
[Close]
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PARPR (Cytochrome c oxidase subunit 2 OS=Paramecium primaurelia GN=COII PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.123e-11
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = -3 
Query:  263 RLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 484
            RLL     +V+P+  ++ +I  S DV+ SW +P+LG+K D V GR    +      G YYGQC+EICG  H  M
Sbjct:   64 RLLRTKKTLVLPSHVNITLISNSYDVILSWFIPALGIKIDCVXGRATHHTFYCDSVGFYYGQCAEICGRYHHHM 137
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_BACSU1.637e-1124.18Cytochrome c oxidase subunit 2 OS=Bacillus subtili... [more]
COX2_PARPR8.123e-1141.89Cytochrome c oxidase subunit 2 OS=Paramecium prima... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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