CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SIMVI (Cytochrome c oxidase subunit 2 OS=Simulium vittatum GN=COII PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 95/159 (59.75%), Postives = 125/159 (78.62%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            ++HG TIEI+WTI P+I+LMFIA+PS  +LY +DE+   PAIT+K IGHQWYW+YEYSD+      +L FDSYM+P ++LE    RLL+VDNR+V+P  T +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G+++GQCSEICG NH+FM
Sbjct:   55 LLHGQTIEIIWTILPAIVLMFIALPSLRILYLLDEIN-SPAITLKTIGHQWYWSYEYSDF-----MNLEFDSYMVPTNELETNGFRLLDVDNRIVLPMNTQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFLMNRPGLFFGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROSI (Cytochrome c oxidase subunit 2 OS=Drosophila simulans GN=mt:CoII PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNRV++P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDEIN-EPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELTTDGFRLLDVDNRVILPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROME (Cytochrome c oxidase subunit 2 OS=Drosophila melanogaster GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 97/180 (53.89%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  N + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P++T+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNRVV+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNNYVNRFLLHGQLIEMIWTILPAIILLFIALPSLRLLYLLDEIN-EPSVTLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELMTDGFRLLDVDNRVVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CANAL (Cytochrome c oxidase subunit 2 OS=Candida albicans GN=COX2 PE=3 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 100/169 (59.17%), Postives = 126/169 (74.56%), Query Frame = -3
Query:  263 YKKNPIPQRIV-HGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            YK N    + V HG  IEI+WTIFP++IL+ IA PSF LLY  DEV+  PA+TIK IG QWYW YEYSD+  S  +++ F+SY+IP+D LE G LRLL+ D  +VVP  TH+R +VT+ DV+HS+ +PSLG+K DA PGRLNQ+S  +QR GVYYGQCSE+CG NH  M
Sbjct:   54 YKDNRFAYKYVRHGQVIEIIWTIFPAVILLLIAFPSFILLYLCDEVLT-PAMTIKVIGLQWYWKYEYSDFVDSIGETIEFESYVIPDDMLEPGALRLLDTDTSIVVPVDTHIRFVVTANDVIHSFTIPSLGMKIDATPGRLNQVSALIQRTGVYYGQCSELCGVNHGMM 221          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ASTPE (Cytochrome c oxidase subunit 2 OS=Asterina pectinifera GN=COII PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.483e-54
Identity = 99/158 (62.66%), Postives = 126/158 (79.75%), Query Frame = -3
Query:  263 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 736
            + G  +E +WTI P++IL+FIA+PS  LLY MDEV  +P +TIKAIGHQWYW+YEY+DY     + L FDSYMIP  DL  G  RLLEVDNR+ +PA+T +R++V+SADVLHSWA+PSLG+K DAVPGRLNQ++  + R G++YGQCSEICG NH+FM
Sbjct:   56 LEGQGLETVWTIIPAVILIFIALPSLQLLYLMDEVN-NPYLTIKAIGHQWYWSYEYADY-----RELEFDSYMIPTSDLTSGNPRLLEVDNRLTLPAQTPIRVLVSSADVLHSWAIPSLGIKMDAVPGRLNQVNFFISRCGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DEKBR (Cytochrome c oxidase subunit 2 OS=Dekkera bruxellensis GN=COX2 PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.941e-54
Identity = 101/169 (59.76%), Postives = 129/169 (76.33%), Query Frame = -3
Query:  263 YKKNPIPQR-IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 766
            Y  + +P + + HG  IEI+WT FP++IL+ IA PSF LLY  DEV+  PA+TIKA+G QWYW YEYSD+     +++ F+SYMIPED LE GQLR L+VD+ +V P  TH+R IVT+ADV+H +A+PSLG+K DAVPGRLNQ S  +QREGVYYGQCSE+CG  H+ M
Sbjct:   59 YNHSVLPYKYLYHGQFIEIVWTTFPAMILLIIAFPSFILLYICDEVIA-PAMTIKAMGLQWYWKYEYSDFIDDKGETIEFESYMIPEDLLEEGQLRQLDVDSPIVCPVDTHMRFIVTAADVIHDFAMPSLGIKIDAVPGRLNQTSALIQREGVYYGQCSELCGVMHSSM 226          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CULQU (Cytochrome c oxidase subunit 2 OS=Culex quinquefasciatus GN=COII PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 96/159 (60.38%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            ++HG TIEI+WTI P+IILMFIA PS  LLY +DE+   P IT+KAIGHQWYW+YEYS++      +L FDSYMIP ++L+L   RLL+VDNR+++P    +RI+VT+ DVLHSW VPSLGVK DA PGRLNQ +  + + G+++GQCSEICG NH+FM
Sbjct:   55 LLHGQTIEIIWTILPAIILMFIAFPSLRLLYLLDEIN-SPLITLKAIGHQWYWSYEYSNF-----MNLEFDSYMIPTNELDLNGFRLLDVDNRIILPLNNQIRILVTATDVLHSWTVPSLGVKIDATPGRLNQTNFLINQSGLFFGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PERAM (Cytochrome c oxidase subunit 2 OS=Periplaneta americana GN=COII PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.324e-53
Identity = 96/159 (60.38%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            ++ G  IE+ WTI P++IL+FIA+PS  LLY MDE+   P +T+K IGHQWYW+YEYSD+   +     FDSYMIP+D+++    RLL+VDNR V+P  T +RIIVT+ADVLHSW +PSLGVK DA PGRLNQ+S  + R GV YGQCSEICG NH+FM
Sbjct:   55 LLEGQMIELAWTIAPAVILIFIAVPSLRLLYLMDEINT-PTVTLKTIGHQWYWSYEYSDFAKVE-----FDSYMIPQDEMDHSMFRLLDVDNRAVLPMNTFIRIIVTAADVLHSWTIPSLGVKADATPGRLNQVSFLINRPGVLYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PARLI (Cytochrome c oxidase subunit 2 OS=Paracentrotus lividus GN=COII PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.324e-53
Identity = 98/158 (62.03%), Postives = 123/158 (77.85%), Query Frame = -3
Query:  263 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 736
            + G  +E +WT+ P+ IL+FIA+PS  LLY MDEV  +P +TIKAIGHQWYW+YEY+DYN      L FDSYM+P  D+ LG  RLLEVDNR+++P +  +R++V+SADVLHSWAVPSLGVK DAVPGRLNQ +    R G++YGQCSEICG NH+FM
Sbjct:   56 LEGQELETIWTVVPAFILIFIALPSLQLLYLMDEVN-NPFLTIKAIGHQWYWSYEYTDYND-----LEFDSYMVPTSDVSLGNPRLLEVDNRLILPMQNPIRVLVSSADVLHSWAVPSLGVKMDAVPGRLNQTTFFAARAGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX1_ACACA (Cytochrome c oxidase subunit 1+2 OS=Acanthamoeba castellanii GN=COX1/2 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.324e-53
Identity = 105/201 (52.24%), Postives = 132/201 (65.67%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYN-----------SSD-------------------------------EQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            I HGTTIEI+WTI P+ IL+FIA+PSFALLY+MDE++ DP +T+K IGHQWYW+YEYSDY+           S D                               E ++ FDSYMI E +L LG LRLL+ D  + +P  TH+R+++TS+DVLHSWAVPS GVK DAVPGRLNQ S+ ++  G +YGQCSE+CG NHAFM
Sbjct:  648 INHGTTIEIIWTILPAFILLFIAVPSFALLYAMDEII-DPVLTVKVIGHQWYWSYEYSDYSVVYSNRMLDYDSIDRFAAMEMMYKGMGYLKDRSLLSYLYIPMVIPETTIKFDSYMIHEAELNLGDLRLLKTDMPLFLPKNTHIRLLITSSDVLHSWAVPSFGVKVDAVPGRLNQTSLYLKNTGTFYGQCSELCGVNHAFM 847          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_SIMVI3.483e-5459.75Cytochrome c oxidase subunit 2 OS=Simulium vittatu... [more]
COX2_DROSI3.483e-5453.33Cytochrome c oxidase subunit 2 OS=Drosophila simul... [more]
COX2_DROME3.483e-5453.89Cytochrome c oxidase subunit 2 OS=Drosophila melan... [more]
COX2_CANAL3.483e-5459.17Cytochrome c oxidase subunit 2 OS=Candida albicans... [more]
COX2_ASTPE3.483e-5462.66Cytochrome c oxidase subunit 2 OS=Asterina pectini... [more]
COX2_DEKBR5.941e-5459.76Cytochrome c oxidase subunit 2 OS=Dekkera bruxelle... [more]
COX2_CULQU1.013e-5360.38Cytochrome c oxidase subunit 2 OS=Culex quinquefas... [more]
COX2_PERAM1.324e-5360.38Cytochrome c oxidase subunit 2 OS=Periplaneta amer... [more]
COX2_PARLI1.324e-5362.03Cytochrome c oxidase subunit 2 OS=Paracentrotus li... [more]
COX1_ACACA1.324e-5352.24Cytochrome c oxidase subunit 1+2 OS=Acanthamoeba c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
back to top