CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PROTA (Cytochrome c oxidase subunit 2 OS=Propithecus tattersalli GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = -3
Query:  263 RIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 742
            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL+ G+LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLGVK DA+PGRLNQ ++   R G+YYGQCSEICG NH+FM
Sbjct:   49 KLMHTSTMDAQEVETVWTILPAIILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----EDLSFDSYMVPSSDLKPGELRLLEVDNRIVLPTELSIRMLISSEDVLHSWAVPSLGVKTDAIPGRLNQATLMTSRPGIYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROPS (Cytochrome c oxidase subunit 2 OS=Drosophila pseudoobscura pseudoobscura GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROPE (Cytochrome c oxidase subunit 2 OS=Drosophila persimilis GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROMI (Cytochrome c oxidase subunit 2 OS=Drosophila miranda GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROLO (Cytochrome c oxidase subunit 2 OS=Drosophila lowei GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROBF (Cytochrome c oxidase subunit 2 OS=Drosophila bifasciata GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 97/180 (53.89%), Postives = 134/180 (74.44%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + ILV  L    +  + I + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N  +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW +P+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITILVGYLMFMLFFNSYINRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNDIE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTIPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROAM (Cytochrome c oxidase subunit 2 OS=Drosophila ambigua GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.729e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNIE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MICPE (Cytochrome c oxidase subunit 2 OS=Microtus pennsylvanicus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.258e-53
Identity = 94/153 (61.44%), Postives = 126/153 (82.35%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +IS  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATISSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROAZ (Cytochrome c oxidase subunit 2 OS=Drosophila azteca GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.258e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROAT (Cytochrome c oxidase subunit 2 OS=Drosophila athabasca GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.258e-53
Identity = 96/180 (53.33%), Postives = 135/180 (75.00%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMFMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELANDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_PROTA1.729e-5356.97Cytochrome c oxidase subunit 2 OS=Propithecus tatt... [more]
COX2_DROPS1.729e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila pseud... [more]
COX2_DROPE1.729e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila persi... [more]
COX2_DROMI1.729e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila miran... [more]
COX2_DROLO1.729e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila lowei... [more]
COX2_DROBF1.729e-5353.89Cytochrome c oxidase subunit 2 OS=Drosophila bifas... [more]
COX2_DROAM1.729e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila ambig... [more]
COX2_MICPE2.258e-5361.44Cytochrome c oxidase subunit 2 OS=Microtus pennsyl... [more]
COX2_DROAZ2.258e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila aztec... [more]
COX2_DROAT2.258e-5353.33Cytochrome c oxidase subunit 2 OS=Drosophila athab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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