CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMMR (Cytochrome c oxidase subunit 2 OS=Tamias merriami GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLNPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMDO (Cytochrome c oxidase subunit 2 OS=Tamias dorsalis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMCI (Cytochrome c oxidase subunit 2 OS=Tamias cinereicollis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMCA (Cytochrome c oxidase subunit 2 OS=Tamias canipes GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMAM (Cytochrome c oxidase subunit 2 OS=Tamias amoenus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SUNME (Cytochrome c oxidase subunit 2 OS=Sundamys muelleri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 93/153 (60.78%), Postives = 126/153 (82.35%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++V+S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HAPGR (Cytochrome c oxidase subunit 2 OS=Hapalemur griseus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 91/153 (59.48%), Postives = 122/153 (79.74%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM+P  DL+ G+LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLGVK DA+PGRLNQ ++   R G+YYGQCSEICG NH+FM
Sbjct:   61 VETVWTILPAAILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMVPSSDLKPGELRLLEVDNRIVLPTELSIRMLISSEDVLHSWAVPSLGVKTDAIPGRLNQATLMASRPGIYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DUGDU (Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 92/153 (60.13%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP +DLE GQLRLLEVDNRVV+P +  +R++++S DVLHSWA+PS+G+K DA+PGRLNQ ++   R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAMILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTNDLEPGQLRLLEVDNRVVLPMEMPIRMLISSEDVLHSWAIPSMGLKTDAIPGRLNQATLMSSRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DROSU (Cytochrome c oxidase subunit 2 OS=Drosophila subobscura GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.029e-53
Identity = 95/180 (52.78%), Postives = 134/180 (74.44%), Query Frame = -3
Query:  263 LRILVRALWHFHYKKNPIPQRIVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 802
            + +LV  L    +  + + + ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N  +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW +P+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   34 ITVLVGYLMVMLFFNSYVNRFLLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNDIE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTIPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMQA (Cytochrome c oxidase subunit 2 OS=Tamias quadrimaculatus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 93/153 (60.78%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYM+P  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMVPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_TAMMR5.029e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias merriami ... [more]
COX2_TAMDO5.029e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias dorsalis ... [more]
COX2_TAMCI5.029e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias cinereico... [more]
COX2_TAMCA5.029e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias canipes G... [more]
COX2_TAMAM5.029e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias amoenus G... [more]
COX2_SUNME5.029e-5360.78Cytochrome c oxidase subunit 2 OS=Sundamys mueller... [more]
COX2_HAPGR5.029e-5359.48Cytochrome c oxidase subunit 2 OS=Hapalemur griseu... [more]
COX2_DUGDU5.029e-5360.13Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=... [more]
COX2_DROSU5.029e-5352.78Cytochrome c oxidase subunit 2 OS=Drosophila subob... [more]
COX2_TAMQA6.569e-5360.78Cytochrome c oxidase subunit 2 OS=Tamias quadrimac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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