CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TAMBU (Cytochrome c oxidase subunit 2 OS=Tamias bulleri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 93/153 (60.78%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWA+PSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAIPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_RHYIS (Cytochrome c oxidase subunit 2 OS=Rhynchomys isarogensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 92/153 (60.13%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++S  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGDLRLLEVDNRIVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVSSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MAXSU (Cytochrome c oxidase subunit 2 OS=Maxomys surifer GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 92/153 (60.13%), Postives = 126/153 (82.35%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_MAXBA (Cytochrome c oxidase subunit 2 OS=Maxomys bartelsii GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 92/153 (60.13%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HYLPR (Cytochrome c oxidase subunit 2 OS=Hylomyscus parvus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 91/153 (59.48%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYM+P DDL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPVLTVKTMGHQWYWSYEYTDY-----EDLCFDSYMVPTDDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_BERBO (Cytochrome c oxidase subunit 2 OS=Berylmys bowersi GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 92/153 (60.13%), Postives = 126/153 (82.35%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_ANIIM (Cytochrome c oxidase subunit 2 OS=Anisomys imitator GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 6.569e-53
Identity = 92/153 (60.13%), Postives = 126/153 (82.35%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TINMA (Cytochrome c oxidase subunit 2 (Fragment) OS=Tinamus major GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 94/158 (59.49%), Postives = 123/158 (77.85%), Query Frame = -3
Query:  263 VHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 736
            V    +E++WTI P+I+L+ +A+PS  +LY MDE+  +P +T+KAIGHQWYW+YEY+D+     + L FDSYMIP  DL  G  RLLEVDNRVV+P ++ +R+I+T+ADVLHSWAVP+LGVK DA+PGRLNQ S    R G++YGQCSEICG NH+FM
Sbjct:   23 VDAQEVELIWTILPAIVLILLALPSLQILYMMDEID-EPDLTLKAIGHQWYWSYEYTDF-----KDLSFDSYMIPTPDLPTGYFRLLEVDNRVVIPMESPIRMIITAADVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSFM 174          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PSECP (Cytochrome c oxidase subunit 2 OS=Pseudalopex culpaeus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 93/153 (60.78%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+LG+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETVWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTQELKLGELRLLEVDNRVVLPMEMTVRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMAMRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_PIG (Cytochrome c oxidase subunit 2 OS=Sus scrofa GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G++RLLEVDNRVV+P +  +R++V+S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGEMRLLEVDNRVVLPMEMTIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_TAMBU6.569e-5360.78Cytochrome c oxidase subunit 2 OS=Tamias bulleri G... [more]
COX2_RHYIS6.569e-5360.13Cytochrome c oxidase subunit 2 OS=Rhynchomys isaro... [more]
COX2_MAXSU6.569e-5360.13Cytochrome c oxidase subunit 2 OS=Maxomys surifer ... [more]
COX2_MAXBA6.569e-5360.13Cytochrome c oxidase subunit 2 OS=Maxomys bartelsi... [more]
COX2_HYLPR6.569e-5359.48Cytochrome c oxidase subunit 2 OS=Hylomyscus parvu... [more]
COX2_BERBO6.569e-5360.13Cytochrome c oxidase subunit 2 OS=Berylmys bowersi... [more]
COX2_ANIIM6.569e-5360.13Cytochrome c oxidase subunit 2 OS=Anisomys imitato... [more]
COX2_TINMA8.579e-5359.49Cytochrome c oxidase subunit 2 (Fragment) OS=Tinam... [more]
COX2_PSECP8.579e-5360.78Cytochrome c oxidase subunit 2 OS=Pseudalopex culp... [more]
COX2_PIG8.579e-5361.44Cytochrome c oxidase subunit 2 OS=Sus scrofa GN=MT... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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