CV712645

Overview
NameCV712645
Unique NameCV712645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_LEMBA (Cytochrome c oxidase subunit 2 OS=Lemniscomys barbarus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 93/153 (60.78%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+ IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++S  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAAILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVSSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_HORSE (Cytochrome c oxidase subunit 2 OS=Equus caballus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 93/153 (60.78%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLVASRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_EQUAS (Cytochrome c oxidase subunit 2 OS=Equus asinus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 93/153 (60.78%), Postives = 124/153 (81.05%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  +P++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-NPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTSDLKPGELRLLEVDNRVVLPMEMTIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQTTLVASRPGLYYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_DANRE (Cytochrome c oxidase subunit 2 OS=Danio rerio GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.579e-53
Identity = 97/159 (61.01%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            I+    IEI+WT+ P+IIL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYM+P  DL  G  RLLE D+R+VVP ++ +RI+V++ DVLHSWAVPSLG+K DAVPGRLNQ +  V R GV+YGQCSEICG NH+FM
Sbjct:   55 ILDSQEIEIVWTVLPAIILILIALPSLRILYLMDEIN-DPHVTIKAVGHQWYWSYEYTDY-----ENLEFDSYMVPTQDLTPGGFRLLETDHRMVVPKESPIRILVSAEDVLHSWAVPSLGIKMDAVPGRLNQTAFIVSRPGVFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_TATRO (Cytochrome c oxidase subunit 2 OS=Tatera robusta GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.120e-52
Identity = 93/165 (56.36%), Postives = 131/165 (79.39%), Query Frame = -3
Query:  263 RIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 742
            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLLEVDNRV++P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ ++   R G++YGQCSEICG+NH+FM
Sbjct:   49 KLIHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLSFDSYMIPTNELKPGELRLLEVDNRVILPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVMSNRPGIFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_OENHY (Cytochrome c oxidase subunit 2 OS=Oenomys hypoxanthus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.120e-52
Identity = 92/153 (60.13%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTTDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_GERGE (Cytochrome c oxidase subunit 2 OS=Gerbillus gerbillus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.120e-52
Identity = 94/165 (56.97%), Postives = 131/165 (79.39%), Query Frame = -3
Query:  263 RIVHGTT-----IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 742
            +++H +T     +E +WTI P+IIL+ IA+PS  +LY MDE+  +P +T+K +GHQWYW+YEY+DY     + L FDSYMIP ++L+ G+LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +I+  R GV+YGQCSEICG+NH+FM
Sbjct:   49 KLIHTSTMDAQEVETIWTILPAIILIMIALPSLRILYMMDEIN-NPILTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNELKPGELRLLEVDNRIVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATITSNRPGVFYGQCSEICGSNHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CHEME (Cytochrome c oxidase subunit 2 OS=Cheirogaleus medius GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.120e-52
Identity = 91/153 (59.48%), Postives = 121/153 (79.08%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P++IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM P  DL+ G+LRLLEVDNRVV+P +  +R++++S DVLHSW VPSLGVK DA+PGRLNQ ++   R G+YYGQCSEICG NH+FM
Sbjct:   61 VETVWTILPAVILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMTPSSDLKPGELRLLEVDNRVVLPTEMSIRMLISSEDVLHSWTVPSLGVKTDAIPGRLNQATLMTSRPGIYYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_CARAU (Cytochrome c oxidase subunit 2 OS=Carassius auratus GN=mt-co2 PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.120e-52
Identity = 98/159 (61.64%), Postives = 124/159 (77.99%), Query Frame = -3
Query:  263 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 739
            I+    IEI+WTI P++IL+ IA+PS  +LY MDE+  DP +TIKA+GHQWYW+YEY+DY     ++L FDSYM+P  DL  GQ RLLE D+R+VVP ++ +RI+V++ DVLHSWAVPSLGVK DAVPGRLNQ +    R GV+YGQCSEICG NH+FM
Sbjct:   55 ILDSQEIEIVWTILPAVILVLIALPSLRILYLMDEIN-DPHLTIKAMGHQWYWSYEYTDY-----ENLGFDSYMVPTQDLAPGQFRLLETDHRMVVPMESPVRILVSAEDVLHSWAVPSLGVKMDAVPGRLNQTAFIASRPGVFYGQCSEICGANHSFM 207          
BLAST of CV712645 vs. ExPASy Swiss-Prot
Match: COX2_SCICA (Cytochrome c oxidase subunit 2 OS=Sciurus carolinensis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.463e-52
Identity = 93/153 (60.78%), Postives = 125/153 (81.70%), Query Frame = -3
Query:  263 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 721
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  +L+ G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRVLYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSELKPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
The following BLAST results are available for this feature:
BLAST of CV712645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_LEMBA8.579e-5360.78Cytochrome c oxidase subunit 2 OS=Lemniscomys barb... [more]
COX2_HORSE8.579e-5360.78Cytochrome c oxidase subunit 2 OS=Equus caballus G... [more]
COX2_EQUAS8.579e-5360.78Cytochrome c oxidase subunit 2 OS=Equus asinus GN=... [more]
COX2_DANRE8.579e-5361.01Cytochrome c oxidase subunit 2 OS=Danio rerio GN=m... [more]
COX2_TATRO1.120e-5256.36Cytochrome c oxidase subunit 2 OS=Tatera robusta G... [more]
COX2_OENHY1.120e-5260.13Cytochrome c oxidase subunit 2 OS=Oenomys hypoxant... [more]
COX2_GERGE1.120e-5256.97Cytochrome c oxidase subunit 2 OS=Gerbillus gerbil... [more]
COX2_CHEME1.120e-5259.48Cytochrome c oxidase subunit 2 OS=Cheirogaleus med... [more]
COX2_CARAU1.120e-5261.64Cytochrome c oxidase subunit 2 OS=Carassius auratu... [more]
COX2_SCICA1.463e-5260.78Cytochrome c oxidase subunit 2 OS=Sciurus caroline... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001L02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712645 ID=CV712645; Name=CV712645; organism=Citrus sinensis; type=EST; length=804bp
ATCAACTTAGGGCGCTANTTGGCCACTAACCACTCGCTCGCCGGCCGTTC
GGGCTCCGCGTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCG
GGAGCCTGGCCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCC
CTACAGCTCCAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCA
CCCCGGGTGGTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTT
TCCGGGCGCACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACT
GACCATAGTAAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAA
CGACCAGGTACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACT
ATGAAGTACATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCT
AGATCATCTTCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATC
GGAACTGTTATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAA
TAGCTTTGATAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTAT
AACAGAGCAAATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAA
GATGGTCCAAAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGA
TTGGATTTTTTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGT
AATA
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