CV712642

Overview
NameCV712642
Unique NameCV712642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_WHEAT (60S ribosomal protein L35 OS=Triticum aestivum GN=RPL35 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.213e-21
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 3
Query:   51 VAMARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            ++  ++K  EL  KSK D               R+ KV     +KL++I  +R SIA+VLTVI+ KQ+A LR  YKNKK+ PLDLR K+TRAIRRRL+  + S   E+ KKR ++FP RK+AIK
Sbjct:    1 MSSGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSG-SKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIK 123          
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_THEPA (60S ribosomal protein L35 OS=Theileria parva GN=RPL35 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.302e-19
Identity = 53/123 (43.09%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            M +++V ELR+KS  +               RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+ V
Sbjct:    1 MEKLRVFELREKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYALLV 123          
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL36_THELE (60S ribosomal protein L35 OS=Theileria lestoquardi GN=RPL35 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.699e-19
Identity = 52/121 (42.98%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 419
            M +++V ELR KS  +               RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:    1 MEKLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKALTTKQLTMKTIKERKRAENLPKRKYAL 121          
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_THEAN (60S ribosomal protein L35 OS=Theileria annulata GN=RPL35 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 3
Query:   63 RIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAI 419
            +++V ELR KS  +               RV+KVT    +KLSKI +VR ++A+VLTV +Q++K   R+ YK     PL+LRPK TRA R+ LT  Q ++KT +E+KR    P RKYA+
Sbjct:   22 KLRVFELRDKSDAELLKLLDDLKQELATFRVSKVTATGTSKLSKITLVRKAVAKVLTVYNQRKKEEARKKYKKLSKTPLNLRPKLTRAKRKGLTTKQLTMKTIKERKRAENLPKRKYAL 140          
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_BABBO (60S ribosomal protein L35 OS=Babesia bovis GN=RPL35 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.671e-18
Identity = 52/123 (42.28%), Postives = 75/123 (60.98%), Query Frame = 3
Query:   57 MARIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIKV 425
            M +IKV+ELR K+  +               RV KVT  + +KLS+I V+R +IA+VLTV +Q+++   R+ Y     +PL++RPK TRA RR LT  Q  LKT +++K+   FP RKYA+ V
Sbjct:    1 MEKIKVYELRNKTDAELLKQLEDLKQEYASMRVQKVTVTSTSKLSQIGVIRKAIAKVLTVYNQRKREEARKQYTKISEMPLNMRPKLTRAKRRALTPKQLHLKTIKQRKKCENFPKRKYALLV 123          
BLAST of CV712642 vs. ExPASy Swiss-Prot
Match: RL35_DICDI (60S ribosomal protein L35 OS=Dictyostelium discoideum GN=rpl35 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.189e-17
Identity = 54/122 (44.26%), Postives = 68/122 (55.74%), Query Frame = 3
Query:   63 RIKVHELRQKSKVDXXXXXXXXXXXXXXXRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAY--KNKKFLPLDLRPKKTRAIRRRLTKHQASLKTEREKKREMYFPMRKYAIK 422
            + K  ELR K+K                 RVA+V    P+KL+KI  VR +IA+VLTV +Q QK  LR  Y  K+   +P DLR KKTRAIRRRLT  Q+ + T R  K    FP R +A+K
Sbjct:    4 KTKAFELRTKNKTQLLEHLKELRTELSSLRVAQVKSPNPSKLAKIGTVRKAIARVLTVFNQTQKNHLRAVYSKKSSSKIPTDLRYKKTRAIRRRLTNKQSKVVTLRVSKTATNFPQRVFAVK 125          
The following BLAST results are available for this feature:
BLAST of CV712642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL35_WHEAT3.213e-2146.7760S ribosomal protein L35 OS=Triticum aestivum GN=... [more]
RL35_THEPA2.302e-1943.0960S ribosomal protein L35 OS=Theileria parva GN=RP... [more]
RL36_THELE6.699e-1942.9860S ribosomal protein L35 OS=Theileria lestoquardi... [more]
RL35_THEAN2.546e-1842.8660S ribosomal protein L35 OS=Theileria annulata GN... [more]
RL35_BABBO5.671e-1842.2860S ribosomal protein L35 OS=Babesia bovis GN=RPL3... [more]
RL35_DICDI8.189e-1744.2660S ribosomal protein L35 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K24_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712642 ID=CV712642; Name=CV712642; organism=Citrus sinensis; type=EST; length=625bp
CATACGCATAAGCAGAGGAAGCCGCCGTTGCAGGAGCAGAGACACCAAAC
GTAGCAATGGCTAGGATCAAGGTGCATGAGCTGAGGCAGAAATCGAAGGT
GGATCTTTTGAACCAGTTGAAGGAACTCAAGGCTGAGCTCGCCCTCCTTC
GCGTTGCTAAGGTCACCGGCGGTGCCCCTAACAAGCTATCCAAGATCAAG
GTGGTGAGGTTGTCGATCGCACAAGTGTTGACTGTCATTTCACAAAAGCA
GAAGGCTGCATTGAGGGAGGCATACAAGAATAAGAAGTTCTTGCCCCTTG
ATCTGCGTCCCAAGAAGACCCGGGCTATCAGGAGAAGGCTTACCAAGCAC
CAGGCTTCACTGAAGACCGAGCGGGAGAAGAAGAGGGAGATGTACTTTCC
CATGAGGAAGTACGCTATTAAGGTGTAGGCTAGAATCTTTTTCTAGGAGT
ATCTTGGTATCTTGCAGTGACGAACCTATTTTGTTGACAAATTTTTACTT
TGTTACCTTTTCAAATATCATTTTTGTTCAATCTTATGTGTGTAAAACTT
GAAGGGTGCATCTCAACCTAAACAAGATGTGCTAGATTGTGATGGAATAG
CAGTCAAGATAGGATTTCTGTTAAA
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