CV712625

Overview
NameCV712625
Unique NameCV712625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 114/139 (82.01%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.993e-58
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG+KGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PONAB (40S ribosomal protein S3 OS=Pongo abelii GN=RPS3 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.193e-57
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            FPE SVELYAE+V  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PVN Y+D+AVRHVLLRQGVLGIKVKIML WD  GK GP  PLPD V+I   K+E+
Sbjct:   79 FPEGSVELYAEEVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEI 217          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 110/147 (74.83%), Postives = 121/147 (82.31%), Query Frame = 2
Query:    8 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATS 448
            PE SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVKIML WDQ+GK GP  P PD + +   K+E   AP   TS
Sbjct:   81 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDE--PAPLEPTS 225          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.690e-54
Identity = 107/153 (69.93%), Postives = 121/153 (79.08%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPATATSIELP 460
            F    +ELYAEKV  RGLCAIAQAESLRYKL GGLAVRRACYGVLR+IMESGAKGCEV+VSGKLR QRAKSMKF DG MI SG P N+Y+++A RHVLLRQGVLGIKVK+ML +D K K GP  PLPD V+ + P +E++Y  P T   I  P
Sbjct:   81 FETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETPETEYKIPPP 233          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.971e-52
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEV 421
            F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFIMESGA+G EVIVSGKLR QRAK+MKF DG MI SG PVN+YI  AVRHV LRQGV+GIKVKIML +D +G+ GP   LPD V I   +EEV
Sbjct:   81 FEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEV 219          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_SCHPO (40S ribosomal protein S3 OS=Schizosaccharomyces pombe GN=rps3 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 102/147 (69.39%), Postives = 119/147 (80.95%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI-HPLKEEVYVAPAT 439
            KF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA YGVLR++ME+GAKGCEV++SGKLRA RAKSMKF DG+MI SGQP  ++IDSA RHVLLRQGVLG+KVKIML  + K +Q  +  LPD+V +  P +EE    P T
Sbjct:   80 KFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQGVLGVKVKIMLP-EPKTRQKKS--LPDIVVVLDPKEEEPITKPYT 223          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_YEAST (40S ribosomal protein S3 OS=Saccharomyces cerevisiae GN=RPS3 PE=1 SV=5)

HSP 1 Score: 182.57 bits (462), Expect = 1.787e-45
Identity = 93/146 (63.70%), Postives = 119/146 (81.51%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVT-IHPLKEEVYVAPA 436
            K+   ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA YGV+R++MESGAKGCEV+VSGKLRA RAK+MKF DG++I SGQPVN++ID+A RHVL+RQGVLGIKVKIM +   K + GP   LPD VT I P +EE  +AP+
Sbjct:   78 KYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQGVLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 221          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_DICDI (40S ribosomal protein S3 OS=Dictyostelium discoideum GN=rps3 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.119e-42
Identity = 88/134 (65.67%), Postives = 103/134 (76.87%), Query Frame = 2
Query:    5 FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGK--QGPTTPLPDLVTI 400
            F E +V L+AEK+ NRGLCA+AQAESL+ KLL GL VR+ACY ++  IM  GAKGCEVIVSGKLRAQRAKSMKF+DGYMI SGQP  ++ID A RHVLLRQG LG+KV IML +D+  K       P PD+V I
Sbjct:   82 FKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKACYAIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKSGQPSKDFIDFACRHVLLRQGTLGVKVAIMLPYDETRKIHGACNIPQPDVVVI 215          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_ENCCU (40S ribosomal protein S3 OS=Encephalitozoon cuniculi GN=RPS3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.504e-31
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 2
Query:    8 PENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 400
            P+ SVE+  EKV+ +GLCA+ QA  +R K+LGG+  RRA    L+    + A+GC++IVSGKL+ QRAKS+KF+DG +I SG  V +YI++    V  +QGV+GI+V+IML +D +G  GP  PLPD +TI
Sbjct:   91 PDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITI 221          
The following BLAST results are available for this feature:
BLAST of CV712625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS3_BOVIN4.100e-5882.0140S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_AMBME6.993e-5881.2940S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]
RS3_PONAB1.193e-5781.2940S ribosomal protein S3 OS=Pongo abelii GN=RPS3 P... [more]
RS3_MANSE8.548e-5674.8340S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME4.690e-5469.9340S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL1.971e-5275.5440S ribosomal protein S3 OS=Caenorhabditis elegans... [more]
RS3_SCHPO5.933e-4969.3940S ribosomal protein S3 OS=Schizosaccharomyces po... [more]
RS3_YEAST1.787e-4563.7040S ribosomal protein S3 OS=Saccharomyces cerevisi... [more]
RS3_DICDI4.119e-4265.6740S ribosomal protein S3 OS=Dictyostelium discoide... [more]
RS3_ENCCU2.504e-3150.3840S ribosomal protein S3 OS=Encephalitozoon cunicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712625 ID=CV712625; Name=CV712625; organism=Citrus sinensis; type=EST; length=698bp
CAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAAAGTTAACAATA
GGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTT
GGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCAT
GGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGG
CTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCA
GGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACATGTTCTTCT
TAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGAATGGGATC
AAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGGTTACCATC
CACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCAACCAGTAT
TGAGCTTCCAGTAGCATAAACCCTGAGTTGAGTTGTGTCCAATGTCTGAT
GTAATGATTTAGTAATAGCTTTATGTTTTCTTTTATCTTTTAATTATCTA
TGGAGGAGCAAGAGAATACTACTGGGTACTGTGCATGATGTTGTCTTGTC
TACAATTTTGGTTATTAGAATATTTGGTTTCAGTTTTGTTCGTTTACTTG
AGCGAAGCTTTGCTAAAATCTTATGCGTAAGCTTCTTTGCTAAAAAAA
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