CV712625

Overview
NameCV712625
Unique NameCV712625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.334e-16
Identity = 52/142 (36.62%), Postives = 74/142 (52.11%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 421
            +F   + ++  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GVLG+KV IM          P   LPD + I   P++EEV
Sbjct:   72 RFNLENPQIEVEEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKVSIM---------PPDARLPDEIEIVEKPIEEEV 204          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 421
            +F   + ++  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I   P++EEV
Sbjct:   72 QFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPGARLPDEIEIIEKPVEEEV 204          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEE 418
            +F   + ++  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + +   P++EE
Sbjct:   72 QFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVSIM---------PPDAKLPDEIEVIEKPIQEE 203          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 418
            +F   + ++  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + +  + EE
Sbjct:   72 QFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEVKEIVEE 201          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 50/142 (35.21%), Postives = 75/142 (52.82%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 421
            +F   + ++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I   P++EEV
Sbjct:   72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIIEKPVEEEV 204          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 418
            +F   + ++  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +        L+ GV+G+KV IM          P   LPD + I  + EE
Sbjct:   72 QFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM---------PPDAKLPDEIEIKEIVEE 201          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   38 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337
            +V N+ L A   A  +   L+ G+  RRA    L  IM +GA+G E+++SGKL +QR ++ KF  GY+  SG+P  E +D A+ HVLL+ G+ G+KV+IM
Sbjct:   85 EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 184          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI--HPLKEEV 421
            +F   + ++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM          P   LPD + I   P +EEV
Sbjct:   72 QFGLENPQIDVQEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM---------PPDARLPDEIEIVEKPAEEEV 204          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 2
Query:   17 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337
            S ++  ++V+N  L A   AE L   L  G   R+A    LR IM+SGA GCEV++SGKL   R +  KF +GY+  SG PVN  +D      + + GV+G++V+++
Sbjct:   77 SPQIEVQQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVRLI 183          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.057e-13
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   17 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIELPV 463
            S ++  ++V N  L A   AE L   L  G   R+A   V+R +M+SGA GCEVI++GKL   RA+  KF +GY+  SG+P    ++      + + G++G++VKI+          P   LPD   I         APA A  +E  +
Sbjct:   77 SPQVEVQQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVKIV---------PPGAKLPDQFEI-----RADAAPAPARVVETDI 211          
The following BLAST results are available for this feature:
BLAST of CV712625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS3_THESM1.334e-1636.6230S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRFU1.742e-1637.3230S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_THEON2.972e-1635.4630S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ3.882e-1635.2530S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_PYRAB6.621e-1635.2130S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRKO1.129e-1535.2530S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_THEPD1.927e-1543.0030S ribosomal protein S3P OS=Thermofilum pendens (... [more]
RS3_PYRHO1.927e-1535.2130S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METHJ2.130e-1439.2530S ribosomal protein S3P OS=Methanospirillum hung... [more]
RS3_METLZ1.057e-1333.5630S ribosomal protein S3P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712625 ID=CV712625; Name=CV712625; organism=Citrus sinensis; type=EST; length=698bp
CAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAAAGTTAACAATA
GGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTT
GGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCAT
GGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGG
CTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCA
GGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACATGTTCTTCT
TAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGAATGGGATC
AAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGGTTACCATC
CACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCAACCAGTAT
TGAGCTTCCAGTAGCATAAACCCTGAGTTGAGTTGTGTCCAATGTCTGAT
GTAATGATTTAGTAATAGCTTTATGTTTTCTTTTATCTTTTAATTATCTA
TGGAGGAGCAAGAGAATACTACTGGGTACTGTGCATGATGTTGTCTTGTC
TACAATTTTGGTTATTAGAATATTTGGTTTCAGTTTTGTTCGTTTACTTG
AGCGAAGCTTTGCTAAAATCTTATGCGTAAGCTTCTTTGCTAAAAAAA
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