CV712625
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 116 RRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 418 RR +LR +ME+GA G E+I+SGKLR++RA+ K K G + +G V+ +D AV LL++GV G++V I+ P PD V I +K E Sbjct: 113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV---------RPHLKPPDYVEIKSVKPE 204
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11 Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2 Query: 104 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 400 G+ R+ + +R +M +GAKG +I+SGKL +R+++ KF DGYM G+P E + + + L+ G++G+ VKIM P LPD + I Sbjct: 105 GMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIII 194
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 2 Query: 2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337 +F ++ ++ + V L A A L L G R+A +LR +M+SGA GCE+++SGKL R++ KF GY+ SG+P E +D+ + + G +G +V+I+ Sbjct: 72 RFRLDNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVRIV 183
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 2 Query: 23 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337 ++ A++V L A A L + G R+A + +R +M +GA GCE+++SGKL R++ K +GY+ +G+PV++ +D + + G LG KV+I+ Sbjct: 79 QIDAQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII 183
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 44/99 (44.44%), Postives = 54/99 (54.55%), Query Frame = 2 Query: 38 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 334 KV L A A L L G RRA Y LR IM +GA G +V VSGKLR +RA+ K+ G + SG V D A+ HVLL+ GV G++V I Sbjct: 89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11 Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 2 Query: 2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337 +F ++ ++ +V N L A A + L G RR + R ++ +GA G ++++SGKLR +RA+ K + G + ++G V +D AV HV L+ GVLGI+V I+ Sbjct: 73 EFGLSNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGIEVMIV 184
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11 Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2 Query: 35 EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 454 E+ N L A QA + + G+ RR + + IM +GA G E+ +SGKL ++RA+ KFK G + SG V+E +D A + L +GV+G+ V I+ + GK G D V I +E V A + IE Sbjct: 85 EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVIIV----KPGKPG------DHVRIKSEEEVKDVVDAIRSEIE 214 The following BLAST results are available for this feature:
BLAST of CV712625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712625 ID=CV712625; Name=CV712625; organism=Citrus sinensis; type=EST; length=698bpback to top |