CV712625

Overview
NameCV712625
Unique NameCV712625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  116 RRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEE 418
            RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL++GV G++V I+          P    PD V I  +K E
Sbjct:  113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV---------RPHLKPPDYVEIKSVKPE 204          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METVS (30S ribosomal protein S3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 2
Query:  104 GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTI 400
            G+  R+  +  +R +M +GAKG  +I+SGKL  +R+++ KF DGYM   G+P  E +  + +   L+ G++G+ VKIM          P   LPD + I
Sbjct:  105 GMHFRKTAHSAVRRVMAAGAKGVAIIISGKLSGERSRTEKFMDGYMKHCGEPAEELVIKSHQLAKLKLGIVGVTVKIM---------RPDVSLPDEIII 194          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METTP (30S ribosomal protein S3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps3p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 37/112 (33.04%), Postives = 62/112 (55.36%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337
            +F  ++ ++  + V    L A   A  L   L  G   R+A   +LR +M+SGA GCE+++SGKL   R++  KF  GY+  SG+P  E +D+     + + G +G +V+I+
Sbjct:   72 RFRLDNPQIDVQDVGKSDLNARVVANRLASSLEHGWYFRKAGQSMLRRVMDSGALGCEIVISGKLTGPRSRVEKFLAGYIKHSGKPAEEIVDTGYAVAVKKLGAIGCQVRIV 183          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_METBU (30S ribosomal protein S3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 34/105 (32.38%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   23 ELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337
            ++ A++V    L A   A  L   +  G   R+A +  +R +M +GA GCE+++SGKL   R++  K  +GY+  +G+PV++ +D      + + G LG KV+I+
Sbjct:   79 QIDAQEVKRPELNAQMMASRLASSIERGWYFRKAGHNTMRAVMNAGALGCEIVISGKLTGSRSRVEKMVNGYIKHAGKPVDDIVDDGFATAVKKLGTLGCKVRII 183          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_IGNH4 (30S ribosomal protein S3P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 44/99 (44.44%), Postives = 54/99 (54.55%), Query Frame = 2
Query:   38 KVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 334
            KV    L A   A  L   L  G   RRA Y  LR IM +GA G +V VSGKLR +RA+  K+  G +  SG  V    D A+ HVLL+ GV G++V I
Sbjct:   89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVII 187          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_HYPBU (30S ribosomal protein S3P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 2
Query:    2 KFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 337
            +F  ++ ++   +V N  L A   A  +   L  G   RR    + R ++ +GA G ++++SGKLR +RA+  K + G + ++G  V   +D AV HV L+ GVLGI+V I+
Sbjct:   73 EFGLSNPQITVRRVENPDLNARVVASRIAVLLERGAYYRRVANVMARRVLNAGAIGVQIVISGKLRTERARYEKVRRGKVYTTGHQVEYMVDRAVMHVTLKPGVLGIEVMIV 184          
BLAST of CV712625 vs. ExPASy Swiss-Prot
Match: RS3_AERPE (30S ribosomal protein S3P OS=Aeropyrum pernix GN=rps3p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2
Query:   35 EKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLEWDQKGKQGPTTPLPDLVTIHPLKEEVYVAPATATSIE 454
            E+  N  L A  QA  +   +  G+  RR  +  +  IM +GA G E+ +SGKL ++RA+  KFK G +  SG  V+E +D A  +  L +GV+G+ V I+    + GK G      D V I   +E   V  A  + IE
Sbjct:   85 EQPENPMLDARVQAFRIARSIERGIHFRRVAFAAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKSGHKVDELVDRASAYARLPKGVIGVDVIIV----KPGKPG------DHVRIKSEEEVKDVVDAIRSEIE 214          
The following BLAST results are available for this feature:
BLAST of CV712625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS3_STAMF2.879e-1139.6030S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_METVS3.760e-1135.3530S ribosomal protein S3P OS=Methanococcus vanniel... [more]
RS3_METTP4.910e-1133.0430S ribosomal protein S3P OS=Methanosaeta thermoph... [more]
RS3_METBU6.413e-1132.3830S ribosomal protein S3P OS=Methanococcoides burt... [more]
RS3_IGNH46.413e-1144.4430S ribosomal protein S3P OS=Ignicoccus hospitalis... [more]
RS3_HYPBU6.413e-1133.9330S ribosomal protein S3P OS=Hyperthermus butylicu... [more]
RS3_AERPE8.376e-1134.2930S ribosomal protein S3P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001K15_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712625 ID=CV712625; Name=CV712625; organism=Citrus sinensis; type=EST; length=698bp
CAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAAAGTTAACAATA
GGGGTCTCTGTGCCATTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTT
GGAGGTCTCGCTGTTCGAAGGGCATGCTATGGTGTGCTGAGATTTATCAT
GGAGAGTGGTGCCAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGG
CTCAACGTGCAAAGTCCATGAAATTTAAAGATGGGTACATGATATCCTCA
GGTCAACCTGTGAATGAATACATCGACTCAGCTGTAAGACATGTTCTTCT
TAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGAATGGGATC
AAAAGGGCAAGCAAGGGCCAACAACACCTTTGCCTGATCTGGTTACCATC
CACCCTCTGAAGGAAGAAGTGTATGTTGCACCAGCGACGGCAACCAGTAT
TGAGCTTCCAGTAGCATAAACCCTGAGTTGAGTTGTGTCCAATGTCTGAT
GTAATGATTTAGTAATAGCTTTATGTTTTCTTTTATCTTTTAATTATCTA
TGGAGGAGCAAGAGAATACTACTGGGTACTGTGCATGATGTTGTCTTGTC
TACAATTTTGGTTATTAGAATATTTGGTTTCAGTTTTGTTCGTTTACTTG
AGCGAAGCTTTGCTAAAATCTTATGCGTAAGCTTCTTTGCTAAAAAAA
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