CV712575 | Citrus Genome Database

Overview


Name	CV712575
Unique Name	CV712575
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	568

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+A M +K
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_EUPCH (Calmodulin OS=Euphorbia characias PE=2 SV=4)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_BRYDI (Calmodulin OS=Bryonia dioica PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 64/130 (49.23%), Postives = 90/130 (69.23%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+A M +K
Sbjct:    9 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 138

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM7_ARATH (Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.989e-32
Identity = 67/130 (51.54%), Postives = 91/130 (70.00%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL+LMA+ MK    + +L++AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE DV  DG+I YE+F+  M+AK
Sbjct:   20 FDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 149

The following BLAST results are available for this feature:

BLAST of CV712575 vs. ExPASy Swiss-Prot

BLAST of CV712575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268


Match Name	E-value	Identity	Description
CALM_SPIOL	1.989e-32	51.54	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	1.989e-32	51.54	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_LILLO	1.989e-32	51.54	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	1.989e-32	51.54	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	1.989e-32	51.54	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]
CALM_HALOK	1.989e-32	49.23	Calmodulin OS=Halichondria okadai PE=2 SV=3	[more]
CALM_EUPCH	1.989e-32	51.54	Calmodulin OS=Euphorbia characias PE=2 SV=4	[more]
CALM_BRYDI	1.989e-32	51.54	Calmodulin OS=Bryonia dioica PE=2 SV=2	[more]
CALMB_ARBPU	1.989e-32	49.23	Calmodulin-beta (Fragment) OS=Arbacia punctulata P...	[more]
CALM7_ARATH	1.989e-32	51.54	Calmodulin-7 OS=Arabidopsis thaliana GN=CAM7 PE=1 ...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_0001J12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712575 ID=CV712575; Name=CV712575; organism=Citrus sinensis; type=EST; length=568bp
TCACATTGGTTCGACACAGACGGTGACGGAAAGATCGCGCCGTCTGAGCT
AGGGATCCTAATGAGGTCACTTGGGGGAAACCCGACCCAGGCCCAGCTCA
AATCCATAATCTCCGAGGAAAAACTAACGGCACCCTTTGACTTCCCGCGG
TTCCTTGACCTGATGGCCAAGCACATGAAACCTGAGCCCTTCGATCGCCA
GTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAACACCGGCTTCGTCT
CCGTCTCCGATCTACGACACATTCTCACTTCTATTGGGGAGAAGCTGGAG
CCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGATGTCGGGTCCGACGG
CAAGATCAAGTACGAGGATTTTATTGCCAGGATGGTGGCCAAGTGACCAG
TGATTGGATCTTCAACTTTAAGATATGATTAATGGGTGTCTGTTTATTTT
TAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTACCTTTCTGTTTTAAT
GTGATGGATTTTGATGGTATTTCTTGAATTGTTGAAAGTAATGCTGACCT
TTTGTTAGGTATTTTCCT