CV712575 | Citrus Genome Database

Overview


Name	CV712575
Unique Name	CV712575
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	568

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 5.786e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M +K
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_XENLA (Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_TORCA (Calmodulin OS=Torpedo californica PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_SHEEP (Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_RAT (Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_RABIT (Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKLTAP--FDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  GF+S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M +K
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_PONAB (Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_PERFV (Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

[Close]

BLAST of CV712575 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 63/130 (48.46%), Postives = 89/130 (68.46%), Query Frame = 1

Query:   10 FDTDGDGKIAPSELGILMRSLGGNPTQAQLKSIISEEKL--TAPFDFPRFLDLMAKHMKPEPFDRQLRDAFKVLDKDNTGFVSVSDLRHILTSIGEKLEPSEFDEWIREVDVGSDGKIKYEDFIARMVAK 393
            FD DGDG I   ELG +MRSLG NPT+A+L+ +I+E         DFP FL +MA+ MK    + ++R+AF+V DKD  G++S ++LRH++T++GEKL   E DE IRE D+  DG++ YE+F+  M AK
Sbjct:   20 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

The following BLAST results are available for this feature:

BLAST of CV712575 vs. ExPASy Swiss-Prot

BLAST of CV712575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 268


Match Name	E-value	Identity	Description
CALM1_BRAFL	5.786e-32	48.46	Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2	[more]
CALM_XENLA	7.557e-32	48.46	Calmodulin OS=Xenopus laevis GN=calm1 PE=1 SV=2	[more]
CALM_TORCA	7.557e-32	48.46	Calmodulin OS=Torpedo californica PE=1 SV=2	[more]
CALM_SHEEP	7.557e-32	48.46	Calmodulin OS=Ovis aries GN=CALM2 PE=2 SV=3	[more]
CALM_RAT	7.557e-32	48.46	Calmodulin OS=Rattus norvegicus GN=Calm1 PE=1 SV=2	[more]
CALM_RABIT	7.557e-32	48.46	Calmodulin OS=Oryctolagus cuniculus GN=CALM PE=1 S...	[more]
CALM_PYUSP	7.557e-32	48.46	Calmodulin OS=Pyuridae sp. PE=1 SV=2	[more]
CALM_PONAB	7.557e-32	48.46	Calmodulin OS=Pongo abelii GN=CALM PE=2 SV=3	[more]
CALM_PERFV	7.557e-32	48.46	Calmodulin OS=Perca flavescens GN=calm PE=2 SV=3	[more]
CALM_ONCSP	7.557e-32	48.46	Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_0001J12_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001J12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV712575 ID=CV712575; Name=CV712575; organism=Citrus sinensis; type=EST; length=568bp
TCACATTGGTTCGACACAGACGGTGACGGAAAGATCGCGCCGTCTGAGCT
AGGGATCCTAATGAGGTCACTTGGGGGAAACCCGACCCAGGCCCAGCTCA
AATCCATAATCTCCGAGGAAAAACTAACGGCACCCTTTGACTTCCCGCGG
TTCCTTGACCTGATGGCCAAGCACATGAAACCTGAGCCCTTCGATCGCCA
GTTGCGTGACGCCTTCAAAGTGCTGGATAAAGATAACACCGGCTTCGTCT
CCGTCTCCGATCTACGACACATTCTCACTTCTATTGGGGAGAAGCTGGAG
CCTTCCGAGTTTGATGAGTGGATCCGGGAAGTGGATGTCGGGTCCGACGG
CAAGATCAAGTACGAGGATTTTATTGCCAGGATGGTGGCCAAGTGACCAG
TGATTGGATCTTCAACTTTAAGATATGATTAATGGGTGTCTGTTTATTTT
TAATGTTTTCTGCAATTAATGTTGAGTTTTGTGTACCTTTCTGTTTTAAT
GTGATGGATTTTGATGGTATTTCTTGAATTGTTGAAAGTAATGCTGACCT
TTTGTTAGGTATTTTCCT