CV712553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_CALMQ (DNA-directed RNA polymerase subunit N OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpoN PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.251e-12 Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MI+P+RC+TCG+ +G+ W+ + + + A G LD L + RYCCRR L+ HV+LI ++L Y ++K Sbjct: 1 MIVPIRCWTCGRPLGHLWEPFRNRVLAGEDPGKVLDDLHVTRYCCRRTLLAHVELINQVLPYGLIEK 67
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_PYRAR (DNA-directed RNA polymerase subunit N OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpoN PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.634e-12 Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MIIPVRCFTCGK +G+ + + + A G LD LGLVRYCCRR LM HV+ I+ +L Y Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVLIY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_SULAC (DNA-directed RNA polymerase subunit N OS=Sulfolobus acidocaldarius GN=rpoN PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12 Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MIIP+RCFTCG V+ +KW+ + + + L LG+ RYCCRRML++HV++I ++++Y Sbjct: 1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREIIHY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_PYRCJ (DNA-directed RNA polymerase subunit N OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpoN PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12 Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MIIPVRCFTCGK +G+ + + + A G LD LG+VRYCCRR LM HV+ I+ LL Y Sbjct: 1 MIIPVRCFTCGKPLGHLYAVFKKRVLAGEHPGRVLDELGVVRYCCRRTLMAHVEWIDDLLVY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METMA (DNA-directed RNA polymerase subunit N OS=Methanosarcina mazei GN=rpoN PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.134e-12 Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+LI+ L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSPY 61
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METAC (DNA-directed RNA polymerase subunit N OS=Methanosarcina acetivorans GN=rpoN PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.787e-12 Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRM ++HV+L++ L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSPY 61
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_THEON (DNA-directed RNA polymerase subunit N OS=Thermococcus onnurineus (strain NA1) GN=rpoN PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12 Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MI+PVRCFTCGKVIG+K+ + ++ LD LG+ RYCCRR L++HV+LI++++ Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_STAMF (DNA-directed RNA polymerase subunit N OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpoN PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12 Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 M+ PVRCFTCG IG+ W+ + ++A G LD LG+ RYCCRRM ++H+++ ++LN+ Sbjct: 1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIEISYEILNF 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METLZ (DNA-directed RNA polymerase subunit N OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoN PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12 Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCFTCGKVI W+ Y A + LD+LGL RYCCRRML++H + +++L Y Sbjct: 1 MIPVRCFTCGKVISTVWEEYQQRKAAGEDPKEILDSLGLDRYCCRRMLLSHKETVDELYPY 61
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_UNCMA (DNA-directed RNA polymerase subunit N OS=Uncultured methanogenic archaeon RC-I GN=rpoN PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11 Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTY--------LDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCFTCGKVI W+ Y ++L + + GD LD LG+ RYCCRRML++HV+L++ L Y Sbjct: 1 MIPVRCFTCGKVISEVWEEYKARVEERKMNLQHGEVLKVGDILDDLGVERYCCRRMLLSHVELVDVLAPY 70 The following BLAST results are available for this feature:
BLAST of CV712553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712553 ID=CV712553; Name=CV712553; organism=Citrus sinensis; type=EST; length=492bpback to top |