CV712553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METB6 (DNA-directed RNA polymerase subunit N OS=Methanoregula boonei (strain 6A8) GN=rpoN PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.059e-11 Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCFTCGKVI W+ Y + LD LG+ RYCCRRML+TH ++I++L Y Sbjct: 1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNPY 61
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_THENV (DNA-directed RNA polymerase subunit N OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoN PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.383e-11 Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MIIPVRCFTCG+ +G+ + + + A G+ LD+LG+ RYCCRR L++HV+ I+ +L Y Sbjct: 1 MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVLAY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_HALWD (DNA-directed RNA polymerase subunit N OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpoN PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.806e-11 Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 M+IPVRCFTCG VIG WD + + + G+ LD LG+ R+CCRRM+++H DL++ + Y Sbjct: 1 MMIPVRCFTCGTVIGEHWDEFKQRARDGNEDPGEVLDDLGIKRHCCRRMMVSHRDLVDVVAPY 63
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_PYRIL (DNA-directed RNA polymerase subunit N OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpoN PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11 Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MI+P+RCFTCGK +G+ + T+ + A G LD LG+ RYCCRR L+ HV+ I+ LL Y Sbjct: 1 MIVPIRCFTCGKPLGHLYITFKHRVLAGEHPGRVLDELGVHRYCCRRTLIAHVEWIDDLLVY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METMJ (DNA-directed RNA polymerase subunit N OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpoN PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11 Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCFTCGKV+ W + + A LD LGL RYCCRRML+TH + +E L Y Sbjct: 1 MIPVRCFTCGKVVSTAWKEFKERRDAGEDPKRILDDLGLERYCCRRMLLTHKETVEDLNPY 61
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_HALLT (DNA-directed RNA polymerase subunit N OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpoN PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11 Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 M+IPVRCFTCG V+G W+ + + + D G LD LG+ R+CCRRM+++H DL++ + Y Sbjct: 1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGKVLDELGVDRHCCRRMMVSHRDLVDVVSPY 63
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_AERPE (DNA-directed RNA polymerase subunit N OS=Aeropyrum pernix GN=rpoN PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.359e-11 Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 M+ PVRCFTCG+ +G+ W + +L+ + G+ALD LG+ RYCCRR L T V IE Y Sbjct: 1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAAKY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_PYRAE (DNA-directed RNA polymerase subunit N OS=Pyrobaculum aerophilum GN=rpoN PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.081e-11 Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 MIIP+RCFTCGK +G+ + + + A G LD LG+ RYCCRR LM HV+ I+ +L Y Sbjct: 1 MIIPIRCFTCGKPLGHLYAVFKRRVLAGEHPGRVLDDLGVTRYCCRRTLMAHVEWIDDVLLY 62
BLAST of CV712553 vs. ExPASy Swiss-Prot
Match: RPON_METBU (DNA-directed RNA polymerase subunit N OS=Methanococcoides burtonii (strain DSM 6242) GN=rpoN PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.864e-11 Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1 Query: 43 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 225 +IPVRCFTCGKVI W+ Y LD L VRYCCRRM + HV+L++ + Y Sbjct: 1 MIPVRCFTCGKVIAGSWEEYKRRTGEGEDPATVLDDLKFVRYCCRRMFLAHVELVDTMAPY 61 The following BLAST results are available for this feature:
BLAST of CV712553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712553 ID=CV712553; Name=CV712553; organism=Citrus sinensis; type=EST; length=492bpback to top |