CV712552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae GN=RPB10 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 7.008e-23 Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = -1 Query: 223 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 429 MI+PVRCF+CGKV+G+KW++YL+LLQ D EG AL LGL RYCCRRM++THVDLIEK L YN L+K D Sbjct: 1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Ashbya gossypii GN=RPB10 PE=3 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 4.543e-22 Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = -1 Query: 223 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 429 MI+PVRCF+CGKV+G+KW+ YL++LQ + EG AL LGL RYCCRRM++THVDLIEK L YN L+K D Sbjct: 1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_ENCCU (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.672e-16 Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = -1 Query: 241 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 429 MIIP+RCFTCGK I +KW+ Y +LL+ D + +ALD LG+ R CCRRM + HVD+++KLL ++ Sbjct: 1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLLKFD 63
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULTO (DNA-directed RNA polymerase subunit N OS=Sulfolobus tokodaii GN=rpoN PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15 Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MIIP+RCFTCG +IG+KW+ ++ + G LD LG+ RYCCRRML++HVD+I+++++Y Sbjct: 1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METKA (DNA-directed RNA polymerase subunit N OS=Methanopyrus kandleri GN=rpoN PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15 Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MIIP+RCFTCG+ I + W+ Y++L++ + E G+ALD LG+ RYCCRRM ++HVDL+E+ L Y Sbjct: 1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEESLPY 63
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULSO (DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus GN=rpoN PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15 Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW +++ + A G LD LG+ RYCCRRML++HVD+I ++++Y Sbjct: 1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIY (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIN (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIM (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIL (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62 The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bpback to top |