CV712552

Overview
NameCV712552
Unique NameCV712552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_YEAST (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Saccharomyces cerevisiae GN=RPB10 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 7.008e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = -1
Query:  223 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 429
            MI+PVRCF+CGKV+G+KW++YL+LLQ D   EG AL  LGL RYCCRRM++THVDLIEK L YN L+K D
Sbjct:    1 MIVPVRCFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_ASHGO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Ashbya gossypii GN=RPB10 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.543e-22
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = -1
Query:  223 MIIPVRCFTCGKVIGNKWDTYLDLLQAD-YPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 429
            MI+PVRCF+CGKV+G+KW+ YL++LQ +   EG AL  LGL RYCCRRM++THVDLIEK L YN L+K D
Sbjct:    1 MIVPVRCFSCGKVVGDKWEAYLNMLQEEELDEGTALSRLGLKRYCCRRMILTHVDLIEKFLRYNPLEKRD 70          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPAB5_ENCCU (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Encephalitozoon cuniculi GN=RPB10 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.672e-16
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = -1
Query:  241 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYN 429
            MIIP+RCFTCGK I +KW+ Y +LL+ D  + +ALD LG+ R CCRRM + HVD+++KLL ++
Sbjct:    1 MIIPIRCFTCGKEISSKWEPYQELLKIDKGKAEALDELGMRRICCRRMFLGHVDIVDKLLKFD 63          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULTO (DNA-directed RNA polymerase subunit N OS=Sulfolobus tokodaii GN=rpoN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIP+RCFTCG +IG+KW+ ++  +      G  LD LG+ RYCCRRML++HVD+I+++++Y
Sbjct:    1 MIIPIRCFTCGSLIGDKWEPFITRVSNGEDPGKVLDDLGVKRYCCRRMLLSHVDIIKEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METKA (DNA-directed RNA polymerase subunit N OS=Methanopyrus kandleri GN=rpoN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.414e-15
Identity = 35/63 (55.56%), Postives = 50/63 (79.37%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIP+RCFTCG+ I + W+ Y++L++ +  E G+ALD LG+ RYCCRRM ++HVDL+E+ L Y
Sbjct:    1 MIIPIRCFTCGRPIAHLWEKYVELIEEEGMEPGEALDELGVDRYCCRRMFLSHVDLLEESLPY 63          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULSO (DNA-directed RNA polymerase subunit N OS=Sulfolobus solfataricus GN=rpoN PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW +++  + A    G  LD LG+ RYCCRRML++HVD+I ++++Y
Sbjct:    1 MLIPIRCFTCGSLIADKWQSFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHVDIINEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIY (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIN (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIM (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIL (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RPAB5_YEAST7.008e-2368.57DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_ASHGO4.543e-2265.71DNA-directed RNA polymerases I, II, and III subuni... [more]
RPAB5_ENCCU1.672e-1655.56DNA-directed RNA polymerases I, II, and III subuni... [more]
RPON_SULTO2.414e-1551.61DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_METKA2.414e-1555.56DNA-directed RNA polymerase subunit N OS=Methanopy... [more]
RPON_SULSO7.025e-1550.00DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIY2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIN2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIM2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIL2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bp
ATTACATATAACAAACTATGGACACACACACACACACCCAAAATTATCCA
TGACTTGGGTAAGAGTTAAGTCTTTAATGCATTTGATGCCTAATATTCCT
CAATACTAAACATAACGGCAAGTGCTCACACAGACATTACAATATGGAAG
TTGACATGCAGATGCAACAGGCAACATGAACAAAACCAACTTCAGGTCCA
TCCATGGGCTTCCTCAGCTGGTGTCAGACTTATCCAATGTGTTGTAGTTA
AGAAGCTTTTCAATGAGGTCAACGTGAGTCATAAGCATTCGCCTACAGCA
ATAGCGAACCAACCCCAAGGCATCAAGTGCGTCTCCTTCAGGATAATCAG
CCTGTAGAAGATCAAGATAGGTGTCCCATTTGTTTCCGATGACCTTGCCG
CAAGTGAAGCAACGAACTGGGATTATCATCTTCCTTGAGTCTTACGCTCG
AGTCGCCTCTTTCTCCCTCCT
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