CV712552
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIK (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIA (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.27) GN=rpoN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 M+IP+RCFTCG +I +KW ++ + A G LD LG+ RYCCRRML++H+D+I ++++Y Sbjct: 1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRHO (DNA-directed RNA polymerase subunit N OS=Pyrococcus horikoshii GN=rpoN PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14 Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MIIPVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ +++Y Sbjct: 1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRFU (DNA-directed RNA polymerase subunit N OS=Pyrococcus furiosus GN=rpoN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14 Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MI+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ +++Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRAB (DNA-directed RNA polymerase subunit N OS=Pyrococcus abyssi GN=rpoN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14 Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MI+PVRCFTCGKVIG+K+ + ++A LD LGL RYCCRRML++HV+LI+ +++Y Sbjct: 1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METS5 (DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14 Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MIIPVRCFTCG +I +KWD + ++A G LD L + R CCRR L+THVD+I +++NY Sbjct: 1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVVNY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METTP (DNA-directed RNA polymerase subunit N OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpoN PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13 Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = -1 Query: 244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426 +IPVRCF+CGKVI + W+ Y + ++++ P G +D LG+ RYCCRRML++HV+++E L Y Sbjct: 1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRRY 60
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRKO (DNA-directed RNA polymerase subunit N OS=Pyrococcus kodakaraensis GN=rpoN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13 Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = -1 Query: 244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429 MI+PVRCFTCGKV+ +K+ + ++A G LD LG+ RYCCRR L++HV+LI++++ Y Sbjct: 1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METBF (DNA-directed RNA polymerase subunit N OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpoN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13 Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1 Query: 244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426 +IPVRCF+CGKVI N WD Y + LD LG+ RYCCRRML++HV+L++ L Y Sbjct: 1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSPY 61
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METPE (DNA-directed RNA polymerase subunit N OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpoN PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12 Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1 Query: 244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426 +IPVRCFTCGKVI W+ + A G LD LGL +YCCRRML+TH ++I++L Y Sbjct: 1 MIPVRCFTCGKVISTAWEEFKQRRDAGEDPGAILDDLGLTQYCCRRMLLTHKEIIDELNPY 61 The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 49
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bpback to top |