CV712552

Overview
NameCV712552
Unique NameCV712552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIK (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULIA (DNA-directed RNA polymerase subunit N OS=Sulfolobus islandicus (strain M.16.27) GN=rpoN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IP+RCFTCG +I +KW  ++  + A    G  LD LG+ RYCCRRML++H+D+I ++++Y
Sbjct:    1 MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLLSHIDIISEVIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRHO (DNA-directed RNA polymerase subunit N OS=Pyrococcus horikoshii GN=rpoN PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.669e-14
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIPVRCFTCGKVIG+K+  +   ++A       LD LGL RYCCRRML++HV+LI+ +++Y
Sbjct:    1 MIIPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRFU (DNA-directed RNA polymerase subunit N OS=Pyrococcus furiosus GN=rpoN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MI+PVRCFTCGKVIG+K+  +   ++A       LD LGL RYCCRRML++HV+LI+ +++Y
Sbjct:    1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRAB (DNA-directed RNA polymerase subunit N OS=Pyrococcus abyssi GN=rpoN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MI+PVRCFTCGKVIG+K+  +   ++A       LD LGL RYCCRRML++HV+LI+ +++Y
Sbjct:    1 MIVPVRCFTCGKVIGDKYYEFKRRVEAGEDPEKVLDDLGLERYCCRRMLLSHVELIDDIMHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METS5 (DNA-directed RNA polymerase subunit N OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpoN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.486e-14
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIPVRCFTCG +I +KWD +   ++A    G  LD L + R CCRR L+THVD+I +++NY
Sbjct:    1 MIIPVRCFTCGSLIADKWDAFSTRVRAGEDPGKVLDDLNVKRLCCRRSLLTHVDIIREVVNY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METTP (DNA-directed RNA polymerase subunit N OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpoN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.014e-13
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCF+CGKVI + W+ Y + ++++ P G  +D LG+ RYCCRRML++HV+++E L  Y
Sbjct:    1 MIPVRCFSCGKVISSVWEEYRERIKSE-PPGKVMDDLGIERYCCRRMLLSHVEVVEMLRRY 60          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRKO (DNA-directed RNA polymerase subunit N OS=Pyrococcus kodakaraensis GN=rpoN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.575e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MI+PVRCFTCGKV+ +K+  +   ++A    G  LD LG+ RYCCRR L++HV+LI++++ Y
Sbjct:    1 MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METBF (DNA-directed RNA polymerase subunit N OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCF+CGKVI N WD Y   +         LD LG+ RYCCRRML++HV+L++ L  Y
Sbjct:    1 MIPVRCFSCGKVISNYWDEYKRRVSDGENAAAVLDDLGITRYCCRRMLLSHVELVDVLSPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METPE (DNA-directed RNA polymerase subunit N OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKVI   W+ +     A    G  LD LGL +YCCRRML+TH ++I++L  Y
Sbjct:    1 MIPVRCFTCGKVISTAWEEFKQRRDAGEDPGAILDDLGLTQYCCRRMLLTHKEIIDELNPY 61          
The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RPON_SULIK2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_SULIA2.044e-1448.39DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_PYRHO2.669e-1456.45DNA-directed RNA polymerase subunit N OS=Pyrococcu... [more]
RPON_PYRFU3.486e-1454.84DNA-directed RNA polymerase subunit N OS=Pyrococcu... [more]
RPON_PYRAB3.486e-1454.84DNA-directed RNA polymerase subunit N OS=Pyrococcu... [more]
RPON_METS53.486e-1453.23DNA-directed RNA polymerase subunit N OS=Metallosp... [more]
RPON_METTP1.014e-1350.82DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_PYRKO6.575e-1350.00DNA-directed RNA polymerase subunit N OS=Pyrococcu... [more]
RPON_METBF8.587e-1352.46DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_METPE1.121e-1252.46DNA-directed RNA polymerase subunit N OS=Methanosp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bp
ATTACATATAACAAACTATGGACACACACACACACACCCAAAATTATCCA
TGACTTGGGTAAGAGTTAAGTCTTTAATGCATTTGATGCCTAATATTCCT
CAATACTAAACATAACGGCAAGTGCTCACACAGACATTACAATATGGAAG
TTGACATGCAGATGCAACAGGCAACATGAACAAAACCAACTTCAGGTCCA
TCCATGGGCTTCCTCAGCTGGTGTCAGACTTATCCAATGTGTTGTAGTTA
AGAAGCTTTTCAATGAGGTCAACGTGAGTCATAAGCATTCGCCTACAGCA
ATAGCGAACCAACCCCAAGGCATCAAGTGCGTCTCCTTCAGGATAATCAG
CCTGTAGAAGATCAAGATAGGTGTCCCATTTGTTTCCGATGACCTTGCCG
CAAGTGAAGCAACGAACTGGGATTATCATCTTCCTTGAGTCTTACGCTCG
AGTCGCCTCTTTCTCCCTCCT
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