CV712552

Overview
NameCV712552
Unique NameCV712552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_CALMQ (DNA-directed RNA polymerase subunit N OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.121e-12
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = -1
Query:  229 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 429
            MI+P+RC+TCG+ +G+ W+ + + + A    G  LD L + RYCCRR L+ HV+LI ++L Y  ++K
Sbjct:    1 MIVPIRCWTCGRPLGHLWEPFRNRVLAGEDPGKVLDDLHVTRYCCRRTLLAHVELINQVLPYGLIEK 67          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRAR (DNA-directed RNA polymerase subunit N OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpoN PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIPVRCFTCGK +G+ +  +   + A    G  LD LGLVRYCCRR LM HV+ I+ +L Y
Sbjct:    1 MIIPVRCFTCGKPLGHLYAVFKQRVLAGEHPGKVLDDLGLVRYCCRRTLMAHVEWIDDVLIY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_SULAC (DNA-directed RNA polymerase subunit N OS=Sulfolobus acidocaldarius GN=rpoN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIP+RCFTCG V+ +KW+ + + +         L  LG+ RYCCRRML++HV++I ++++Y
Sbjct:    1 MIIPIRCFTCGAVVADKWEPFSNRVMGGEDPEKVLTELGVNRYCCRRMLLSHVNIIREIIHY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRCJ (DNA-directed RNA polymerase subunit N OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 34/62 (54.84%), Postives = 42/62 (67.74%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIPVRCFTCGK +G+ +  +   + A    G  LD LG+VRYCCRR LM HV+ I+ LL Y
Sbjct:    1 MIIPVRCFTCGKPLGHLYAVFKKRVLAGEHPGRVLDELGVVRYCCRRTLMAHVEWIDDLLVY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METMA (DNA-directed RNA polymerase subunit N OS=Methanosarcina mazei GN=rpoN PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCF+CGKVI N WD Y   +         LD LG+ RYCCRRM ++HV+LI+ L  Y
Sbjct:    1 MIPVRCFSCGKVISNYWDEYKRRVTDGEDAAAVLDDLGITRYCCRRMFLSHVELIDVLSPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METAC (DNA-directed RNA polymerase subunit N OS=Methanosarcina acetivorans GN=rpoN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.498e-12
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCF+CGKVI N WD Y   +         LD LG+ RYCCRRM ++HV+L++ L  Y
Sbjct:    1 MIPVRCFSCGKVISNYWDEYKRRVTDGEGSAAVLDDLGITRYCCRRMFLSHVELVDVLSPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_THEON (DNA-directed RNA polymerase subunit N OS=Thermococcus onnurineus (strain NA1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 31/62 (50.00%), Postives = 45/62 (72.58%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MI+PVRCFTCGKVIG+K+  +   ++        LD LG+ RYCCRR L++HV+LI++++ Y
Sbjct:    1 MIVPVRCFTCGKVIGDKYYEFKARVEKGEDPEKVLDDLGVERYCCRRTLLSHVELIDQVMVY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_STAMF (DNA-directed RNA polymerase subunit N OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+ PVRCFTCG  IG+ W+ +   ++A    G  LD LG+ RYCCRRM ++H+++  ++LN+
Sbjct:    1 MMFPVRCFTCGAPIGHLWEEFKKRVEAGEDPGKVLDDLGVKRYCCRRMFLSHIEISYEILNF 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METLZ (DNA-directed RNA polymerase subunit N OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpoN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.263e-12
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKVI   W+ Y     A     + LD+LGL RYCCRRML++H + +++L  Y
Sbjct:    1 MIPVRCFTCGKVISTVWEEYQQRKAAGEDPKEILDSLGLDRYCCRRMLLSHKETVDELYPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_UNCMA (DNA-directed RNA polymerase subunit N OS=Uncultured methanogenic archaeon RC-I GN=rpoN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTY--------LDLLQADYPE-GDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKVI   W+ Y        ++L   +  + GD LD LG+ RYCCRRML++HV+L++ L  Y
Sbjct:    1 MIPVRCFTCGKVISEVWEEYKARVEERKMNLQHGEVLKVGDILDDLGVERYCCRRMLLSHVELVDVLAPY 70          
The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RPON_CALMQ1.121e-1243.28DNA-directed RNA polymerase subunit N OS=Caldivirg... [more]
RPON_PYRAR1.465e-1254.84DNA-directed RNA polymerase subunit N OS=Pyrobacul... [more]
RPON_SULAC1.913e-1245.16DNA-directed RNA polymerase subunit N OS=Sulfolobu... [more]
RPON_PYRCJ1.913e-1254.84DNA-directed RNA polymerase subunit N OS=Pyrobacul... [more]
RPON_METMA1.913e-1252.46DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_METAC2.498e-1250.82DNA-directed RNA polymerase subunit N OS=Methanosa... [more]
RPON_THEON3.263e-1250.00DNA-directed RNA polymerase subunit N OS=Thermococ... [more]
RPON_STAMF3.263e-1245.16DNA-directed RNA polymerase subunit N OS=Staphylot... [more]
RPON_METLZ3.263e-1250.82DNA-directed RNA polymerase subunit N OS=Methanoco... [more]
RPON_UNCMA9.494e-1248.57DNA-directed RNA polymerase subunit N OS=Unculture... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bp
ATTACATATAACAAACTATGGACACACACACACACACCCAAAATTATCCA
TGACTTGGGTAAGAGTTAAGTCTTTAATGCATTTGATGCCTAATATTCCT
CAATACTAAACATAACGGCAAGTGCTCACACAGACATTACAATATGGAAG
TTGACATGCAGATGCAACAGGCAACATGAACAAAACCAACTTCAGGTCCA
TCCATGGGCTTCCTCAGCTGGTGTCAGACTTATCCAATGTGTTGTAGTTA
AGAAGCTTTTCAATGAGGTCAACGTGAGTCATAAGCATTCGCCTACAGCA
ATAGCGAACCAACCCCAAGGCATCAAGTGCGTCTCCTTCAGGATAATCAG
CCTGTAGAAGATCAAGATAGGTGTCCCATTTGTTTCCGATGACCTTGCCG
CAAGTGAAGCAACGAACTGGGATTATCATCTTCCTTGAGTCTTACGCTCG
AGTCGCCTCTTTCTCCCTCCT
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