CV712552

Overview
NameCV712552
Unique NameCV712552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METB6 (DNA-directed RNA polymerase subunit N OS=Methanoregula boonei (strain 6A8) GN=rpoN PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKVI   W+ Y    +        LD LG+ RYCCRRML+TH ++I++L  Y
Sbjct:    1 MIPVRCFTCGKVISPAWEEYKARREKGEDPKKILDDLGITRYCCRRMLLTHKEIIDELNPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_THENV (DNA-directed RNA polymerase subunit N OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.240e-11
Identity = 30/62 (48.39%), Postives = 44/62 (70.97%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIPVRCFTCG+ +G+ +  +   + A    G+ LD+LG+ RYCCRR L++HV+ I+ +L Y
Sbjct:    1 MIIPVRCFTCGRPLGHLYPIFKRRVLAGERPGEVLDSLGVYRYCCRRTLLSHVEWIDDVLAY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_HALWD (DNA-directed RNA polymerase subunit N OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQ-ADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IPVRCFTCG VIG  WD +    +  +   G+ LD LG+ R+CCRRM+++H DL++ +  Y
Sbjct:    1 MMIPVRCFTCGTVIGEHWDEFKQRARDGNEDPGEVLDDLGIKRHCCRRMMVSHRDLVDVVAPY 63          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRIL (DNA-directed RNA polymerase subunit N OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MI+P+RCFTCGK +G+ + T+   + A    G  LD LG+ RYCCRR L+ HV+ I+ LL Y
Sbjct:    1 MIVPIRCFTCGKPLGHLYITFKHRVLAGEHPGRVLDELGVHRYCCRRTLIAHVEWIDDLLVY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METMJ (DNA-directed RNA polymerase subunit N OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKV+   W  + +   A       LD LGL RYCCRRML+TH + +E L  Y
Sbjct:    1 MIPVRCFTCGKVVSTAWKEFKERRDAGEDPKRILDDLGLERYCCRRMLLTHKETVEDLNPY 61          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_HALLT (DNA-directed RNA polymerase subunit N OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLL-QADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+IPVRCFTCG V+G  W+ + +   + D   G  LD LG+ R+CCRRM+++H DL++ +  Y
Sbjct:    1 MMIPVRCFTCGNVVGEHWEEFKERAREGDEDPGKVLDELGVDRHCCRRMMVSHRDLVDVVSPY 63          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_AERPE (DNA-directed RNA polymerase subunit N OS=Aeropyrum pernix GN=rpoN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.115e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            M+ PVRCFTCG+ +G+ W  + +L+ +    G+ALD LG+ RYCCRR L T V  IE    Y
Sbjct:    1 MLPPVRCFTCGRPLGHLWPRFRELVASGKTPGEALDELGVDRYCCRRTLFTSVTYIEHAAKY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_PYRAE (DNA-directed RNA polymerase subunit N OS=Pyrobaculum aerophilum GN=rpoN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.762e-11
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = -1
Query:  244 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 429
            MIIP+RCFTCGK +G+ +  +   + A    G  LD LG+ RYCCRR LM HV+ I+ +L Y
Sbjct:    1 MIIPIRCFTCGKPLGHLYAVFKRRVLAGEHPGRVLDDLGVTRYCCRRTLMAHVEWIDDVLLY 62          
BLAST of CV712552 vs. ExPASy Swiss-Prot
Match: RPON_METBU (DNA-directed RNA polymerase subunit N OS=Methanococcoides burtonii (strain DSM 6242) GN=rpoN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.154e-11
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = -1
Query:  244 IIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNY 426
            +IPVRCFTCGKVI   W+ Y             LD L  VRYCCRRM + HV+L++ +  Y
Sbjct:    1 MIPVRCFTCGKVIAGSWEEYKRRTGEGEDPATVLDDLKFVRYCCRRMFLAHVELVDTMAPY 61          
The following BLAST results are available for this feature:
BLAST of CV712552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
RPON_METB69.494e-1250.82DNA-directed RNA polymerase subunit N OS=Methanore... [more]
RPON_THENV1.240e-1148.39DNA-directed RNA polymerase subunit N OS=Thermopro... [more]
RPON_HALWD1.619e-1147.62DNA-directed RNA polymerase subunit N OS=Haloquadr... [more]
RPON_PYRIL2.115e-1150.00DNA-directed RNA polymerase subunit N OS=Pyrobacul... [more]
RPON_METMJ2.115e-1150.82DNA-directed RNA polymerase subunit N OS=Methanocu... [more]
RPON_HALLT2.115e-1146.03DNA-directed RNA polymerase subunit N OS=Halorubru... [more]
RPON_AERPE2.115e-1148.39DNA-directed RNA polymerase subunit N OS=Aeropyrum... [more]
RPON_PYRAE2.762e-1150.00DNA-directed RNA polymerase subunit N OS=Pyrobacul... [more]
RPON_METBU6.154e-1147.54DNA-directed RNA polymerase subunit N OS=Methanoco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001I22_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712552 ID=CV712552; Name=CV712552; organism=Citrus sinensis; type=EST; length=471bp
ATTACATATAACAAACTATGGACACACACACACACACCCAAAATTATCCA
TGACTTGGGTAAGAGTTAAGTCTTTAATGCATTTGATGCCTAATATTCCT
CAATACTAAACATAACGGCAAGTGCTCACACAGACATTACAATATGGAAG
TTGACATGCAGATGCAACAGGCAACATGAACAAAACCAACTTCAGGTCCA
TCCATGGGCTTCCTCAGCTGGTGTCAGACTTATCCAATGTGTTGTAGTTA
AGAAGCTTTTCAATGAGGTCAACGTGAGTCATAAGCATTCGCCTACAGCA
ATAGCGAACCAACCCCAAGGCATCAAGTGCGTCTCCTTCAGGATAATCAG
CCTGTAGAAGATCAAGATAGGTGTCCCATTTGTTTCCGATGACCTTGCCG
CAAGTGAAGCAACGAACTGGGATTATCATCTTCCTTGAGTCTTACGCTCG
AGTCGCCTCTTTCTCCCTCCT
back to top