CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CYAP4 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=frr PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.136e-44
Identity = 84/149 (56.38%), Postives = 118/149 (79.19%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            DV+  M+++++  +  FN++RTGR+N ++LD++ VEYYG+   L+S+A I+TPDSS++ IQP+D++SL  IEKAI  SDLG+TPNNDG VIRL +P LTS+RRKEL K  +K AEEGKV++RN+RRDA+ + +K  K  +LSED VKDL
Sbjct:    5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVSIRNVRRDAVDSVKKQGKAGELSEDEVKDL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNS3 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311) GN=frr PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.217e-43
Identity = 80/148 (54.05%), Postives = 115/148 (77.70%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D++A M ++++  + NFN++RTGR+NP++LD+I VEYYG+   LKS+A ++TPDS ++ +QP+D  SL  IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ AK +EEGKVA+R++RRDA+   +K +KE  LSED  +D
Sbjct:    5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAVQPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVALRSVRRDAIDKIKKQEKEGDLSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNY3 (Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803) GN=frr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.590e-43
Identity = 83/149 (55.70%), Postives = 116/149 (77.85%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            ++K  M+++++  + +FN++RTGR+N ++LD+I VEYYG+   LKS+A I TPD+S+++IQP+D  S+ +IEKAI  SDLG+TPNNDG+VIRL +P LT+ERRKEL KV  K AEEGKVA+RNIRRDA+    K +K   +SED  +DL
Sbjct:    5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVAIRNIRRDAVDEVRKQEKNSDISEDEARDL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_NOSP7 (Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=frr PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 80/148 (54.05%), Postives = 117/148 (79.05%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D K++M+ +++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD+S++LIQPY++++L  IEKAI  SD+G+TP+NDG VIRL +P LTS+RRKE  K+  K AEEG+VA+RNIRRDA+ +  K +K  ++S+D  KD
Sbjct:    5 DAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTILIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEGRVAIRNIRRDAIDSIRKQEKASEISKDESKD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CYAP7 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424) GN=frr PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.625e-43
Identity = 81/149 (54.36%), Postives = 117/149 (78.52%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +V+  M++TI+  + +FN++RTGR+N A+LD++ V+YYG+   LKS+A I TPD++++ IQPYD+ S+  IEKAI  SD+G+TPNNDG++IRL +P LT+ERRKEL K+  K AEEGKVA+RNIRRDA+ +  K +K  +LSED  ++L
Sbjct:    5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVAIRNIRRDAIDSVRKQEKNHELSEDESRNL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMT (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL2A) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.889e-43
Identity = 82/148 (55.41%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            ++K  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D
Sbjct:    5 ELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMM (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.889e-43
Identity = 80/148 (54.05%), Postives = 115/148 (77.70%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            ++K  M ++++  + NF ++RTGR+NP++LD+I VEYYG+   LKS+A I+TPDS ++ IQP+D  S+  IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE  K+ A+ AEEGKVA+RNIRRDA+   +KL+K+ +LS+D   D
Sbjct:    5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKVALRNIRRDAIDKVKKLEKDAELSKDQSHD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_TRIEI (Ribosome-recycling factor OS=Trichodesmium erythraeum (strain IMS101) GN=frr PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.030e-42
Identity = 81/149 (54.36%), Postives = 115/149 (77.18%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            + + +M++ I+  + +FN+VRTGR+N ++LD++ VEYYGSP  LKS+A I  PD+S++ IQPYDK+SL  IEKAI  SD+G+TPNNDG +IRL +P LT+ERR+E+ K  AK AEEGKV++RNIRRDA+ +  K +K   +S+D  +DL
Sbjct:    5 EAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTITIQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKVSIRNIRRDAVDSIRKQEKNSDISKDESRDL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNSC (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605) GN=frr PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.346e-42
Identity = 80/148 (54.05%), Postives = 115/148 (77.70%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM1 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL1A) GN=frr PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.758e-42
Identity = 81/148 (54.73%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            ++K  M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D
Sbjct:    5 ELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRD 152          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CYAP47.136e-4456.38Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNS31.217e-4354.05Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNY31.590e-4355.70Ribosome-recycling factor OS=Synechocystis sp. (st... [more]
RRF_NOSP74.625e-4354.05Ribosome-recycling factor OS=Nostoc punctiforme (s... [more]
RRF_CYAP74.625e-4354.36Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_PROMT7.889e-4355.41Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROMM7.889e-4354.05Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_TRIEI1.030e-4254.36Ribosome-recycling factor OS=Trichodesmium erythra... [more]
RRF_SYNSC1.346e-4254.05Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_PROM11.758e-4254.73Ribosome-recycling factor OS=Prochlorococcus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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