CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.758e-42
Identity = 81/149 (54.36%), Postives = 119/149 (79.87%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +V+ +M++T++  +  FN++RTGR+N ++LD+I VEYYG    LKS+A I+TPD++++ IQP+D++S+ +IEKAI  SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVA+RNIRRDA+ A  K +K  ++SED  +DL
Sbjct:    5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVAIRNIRRDAIDAIRKREKGHEISEDESRDL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM4 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9211) GN=frr PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.295e-42
Identity = 79/148 (53.38%), Postives = 115/148 (77.70%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +++  M ++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS ++ IQP+D SSL  IEK+I  SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA++  +K +KE ++SED  +D
Sbjct:    5 ELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAIERIKKSEKESEISEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNPX (Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102) GN=frr PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 79/148 (53.38%), Postives = 114/148 (77.03%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.114e-42
Identity = 78/149 (52.35%), Postives = 114/149 (76.51%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            D+K  M+++++  + +FN++RTGR+N ++LD++ VEYYG+   L  +A I+TPD+++++IQPYDK S+  IEKAI  SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA+RNIRRDA+    K +K   +SED  + L
Sbjct:    5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIRRDAIDDVRKQEKNSDISEDESRGL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNPW (Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803) GN=frr PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.139e-41
Identity = 79/148 (53.38%), Postives = 114/148 (77.03%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D+++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L  IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D
Sbjct:    5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.488e-41
Identity = 79/148 (53.38%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S L +IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D
Sbjct:    5 DLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.384e-41
Identity = 79/149 (53.02%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +++  M++TI+  + +FN++RTGR++ ++LD+I VEYYG+   LKS+A I+TPDSS+++IQP+D+ SL  +E+AI  SDLG+TPNNDG  IRL +P LT ERR+EL K   K AEEGKVA+RNIRRDA+    K +K   +SED  + L
Sbjct:    5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDESRSL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.645e-40
Identity = 75/146 (51.37%), Postives = 116/146 (79.45%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS   LK +A ++ P+   L+IQPYD S +  IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEEG+VA+RN RRDA +  +K++K+ +L+ED++K
Sbjct:    9 LEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEGRVALRNGRRDANEQLKKMEKDSELTEDDLK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.148e-40
Identity = 79/148 (53.38%), Postives = 116/148 (78.38%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D SSL++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S+D  +D
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISKDVSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_SYNWW (Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40
Identity = 81/147 (55.10%), Postives = 112/147 (76.19%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D + RM++TI+ +R +  S+R GR+NPAML+KI V+YYG P  +  +A I  P++  L+IQP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +VAVRNIRRD+ +  +  +KEK +SED+ K
Sbjct:    8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVAVRNIRRDSNELLKSGEKEKLISEDDNK 154          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_MICAN1.758e-4254.36Ribosome-recycling factor OS=Microcystis aeruginos... [more]
RRF_PROM42.295e-4253.38Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_SYNPX5.114e-4253.38Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_CYAA55.114e-4252.35Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNPW1.139e-4153.38Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNS91.488e-4153.38Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNP27.384e-4153.02Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_ALKMQ1.645e-4051.37Ribosome-recycling factor OS=Alkaliphilus metallir... [more]
RRF_PROMP2.148e-4053.38Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_SYNWW2.806e-4055.10Ribosome-recycling factor OS=Syntrophomonas wolfei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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