CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40
Identity = 77/147 (52.38%), Postives = 111/147 (75.51%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D K RM++ ID++      +R GR+NPA+LD++ VEYYG+   L  +A +  P++  LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE KVAVRNIRRDA    +KLQK+ +++ED ++
Sbjct:    8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIRRDANDELKKLQKDGEMTEDELR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39
Identity = 75/148 (50.68%), Postives = 112/148 (75.68%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +V+  M+++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS +L IQP+D  SL  IEKAI  SDLG TPNNDG++IR+ +P LT ERRK+  K+ +K AEE K+++RNIRRDA++  +  +K+ + SED  +D
Sbjct:    5 EVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKISLRNIRRDAIEKIKGSEKDGEFSEDQSRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39
Identity = 78/148 (52.70%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I T DS ++ IQP+D S L++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S D  +D
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISIDESRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39
Identity = 79/144 (54.86%), Postives = 108/144 (75.00%), Query Frame = 2
Query:  359 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            M + I+    NF ++RTGR++ ++LD+I VEYYG P  LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+   AEEG+VAVRNIRR A+    K +K+ K+SED  + L
Sbjct:   10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIRRHAIDEVRKEEKDAKVSEDEARRL 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.102e-39
Identity = 75/147 (51.02%), Postives = 111/147 (75.51%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + ++ M++TI++V+  F S+R GR+ PA+LDK+ V YYG+P  +  +A I+ P++  L++QP+DK+ L  IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+VA+RNIRRD  +  +  QK+ K+SED +K
Sbjct:    8 EAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIRRDTNEQLKSQQKDGKMSEDELK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.052e-39
Identity = 77/148 (52.03%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +++  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39
Identity = 76/148 (51.35%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +++  M ++I+  + NFN++RTGR+N ++LD++ VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38
Identity = 76/147 (51.70%), Postives = 110/147 (74.83%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +++ +M +TI+ ++    S+R GR+NPAMLD+I VEYYGSP  +K IA I  P+   + IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV  K +E+ KV +RN RR+A    +K+QK+ +++ED +K
Sbjct:    8 NLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNERRNANDRLKKMQKDNEITEDELK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38
Identity = 75/148 (50.68%), Postives = 113/148 (76.35%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +++  M ++I+  + NFN++RTGR+N ++LD++ V+YYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LACS1 (Ribosome-recycling factor OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=frr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38
Identity = 77/149 (51.68%), Postives = 109/149 (73.15%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            + + +M +  D +R    ++R GR+N ++L++I VEYYG+P  L  +AQI+ P++  LL+ PYDK+SLK+IE AI++SDLG+ P NDG  IRL +PQLT ERRKEL+K V   +E GKVAVRNIRRD + A +K QK   L+ED+++DL
Sbjct:   10 EAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGKVAVRNIRRDMMDALKKAQKNGDLTEDDLRDL 158          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACSK2.806e-4052.38Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_PROMA1.393e-3950.68Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM51.393e-3952.70Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_GLOVI1.393e-3954.86Ribosome-recycling factor OS=Gloeobacter violaceus... [more]
RRF_PELTS3.102e-3951.02Ribosome-recycling factor OS=Pelotomaculum thermop... [more]
RRF_PROM94.052e-3952.03Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROMS5.292e-3951.35Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_ALKOO1.179e-3851.70Ribosome-recycling factor OS=Alkaliphilus oremland... [more]
RRF_PROM21.540e-3850.68Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_LACS11.540e-3851.68Ribosome-recycling factor OS=Lactobacillus salivar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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