CV712551
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40 Identity = 77/147 (52.38%), Postives = 111/147 (75.51%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784 D K RM++ ID++ +R GR+NPA+LD++ VEYYG+ L +A + P++ LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE KVAVRNIRRDA +KLQK+ +++ED ++ Sbjct: 8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIRRDANDELKKLQKDGEMTEDELR 154
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39 Identity = 75/148 (50.68%), Postives = 112/148 (75.68%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 +V+ M+++++ + NFN++RTGR+N ++LD++ VEYYG+ LKS+A I+TPDS +L IQP+D SL IEKAI SDLG TPNNDG++IR+ +P LT ERRK+ K+ +K AEE K+++RNIRRDA++ + +K+ + SED +D Sbjct: 5 EVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKISLRNIRRDAIEKIKGSEKDGEFSEDQSRD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39 Identity = 78/148 (52.70%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 ++++ M ++++ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I T DS ++ IQP+D S L++IEKAI SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA+RNIRRDA+ +K +KE +S D +D Sbjct: 5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISIDESRD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.393e-39 Identity = 79/144 (54.86%), Postives = 108/144 (75.00%), Query Frame = 2 Query: 359 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790 M + I+ NF ++RTGR++ ++LD+I VEYYG P LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+ AEEG+VAVRNIRR A+ K +K+ K+SED + L Sbjct: 10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIRRHAIDEVRKEEKDAKVSEDEARRL 153
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 3.102e-39 Identity = 75/147 (51.02%), Postives = 111/147 (75.51%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784 + ++ M++TI++V+ F S+R GR+ PA+LDK+ V YYG+P + +A I+ P++ L++QP+DK+ L IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+VA+RNIRRD + + QK+ K+SED +K Sbjct: 8 EAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIRRDTNEQLKSQQKDGKMSEDELK 154
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 4.052e-39 Identity = 77/148 (52.03%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 +++ M ++I+ + NFN++RTGR+N ++LD+I VEYYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA+RNIRRDA+ +K +K+ +S D +D Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROMS (Ribosome-recycling factor OS=Prochlorococcus marinus (strain AS9601) GN=frr PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.292e-39 Identity = 76/148 (51.35%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 +++ M ++I+ + NFN++RTGR+N ++LD++ VEYYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA+RNIRRDA+ +K +K+ +S D +D Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38 Identity = 76/147 (51.70%), Postives = 110/147 (74.83%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784 +++ +M +TI+ ++ S+R GR+NPAMLD+I VEYYGSP +K IA I P+ + IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV K +E+ KV +RN RR+A +K+QK+ +++ED +K Sbjct: 8 NLEEKMNKTINALKDELASIRAGRANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNERRNANDRLKKMQKDNEITEDELK 154
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38 Identity = 75/148 (50.68%), Postives = 113/148 (76.35%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787 +++ M ++I+ + NFN++RTGR+N ++LD++ V+YYG+ +KS+A I+T DS ++ IQP+D S L++IEK+I SDLG+TPNNDG+VIR+ +P LT ERRKE K+ +K AEEGKVA+RNIRRDA+ +K +K+ +S D +D Sbjct: 5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRD 152
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LACS1 (Ribosome-recycling factor OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=frr PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38 Identity = 77/149 (51.68%), Postives = 109/149 (73.15%), Query Frame = 2 Query: 344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790 + + +M + D +R ++R GR+N ++L++I VEYYG+P L +AQI+ P++ LL+ PYDK+SLK+IE AI++SDLG+ P NDG IRL +PQLT ERRKEL+K V +E GKVAVRNIRRD + A +K QK L+ED+++DL Sbjct: 10 EAQEKMTKAEDSLRRELGNIRAGRANASLLNRINVEYYGAPTPLNQMAQISVPEARVLLVTPYDKTSLKNIEHAIMASDLGIAPMNDGTAIRLVIPQLTEERRKELAKQVKAVSETGKVAVRNIRRDMMDALKKAQKNGDLTEDDLRDL 158 The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bpback to top |