CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_RUBXD (Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=frr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 73/145 (50.34%), Postives = 109/145 (75.17%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            D + RM+  ++ VR  F ++RTGR+NPA+LD+IEVE YG+ + +KS+A I  P+   L I PYD + LK+IE+AI  SDLG+ P NDG++IRL +P+LT ERR+EL ++V   AEEG+V+VRN+RRD +   ++L++E ++SED+
Sbjct:    9 DAERRMKGALEAVRHQFATIRTGRANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRVSVRNVRRDEMHDIQRLRREGEISEDD 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.702e-37
Identity = 70/147 (47.62%), Postives = 111/147 (75.51%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            + +M++++D ++  +  +R GR+NP +LDK+ V+YYG+P +++++A ++ P++  + IQP++   +K IEKAI++SDLG+TP+NDG+VIRL  P+LT ERRK+L K V K+AE  KVAVRN+RRDA  A +KL K  ++SED  K +
Sbjct:    9 EGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKVAVRNVRRDANDAIKKLAKANEISEDEQKQI 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LISW6 (Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 73/145 (50.34%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +M++    +     ++R GR+N ++LD++ V+YYG+P  +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++
Sbjct:   10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 71/145 (48.97%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +M++ +        S+R GR+N  +L+K+ V+YYG P  +  +A I+ P++  L+IQPYDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVRNIRRDA    +KL+K  +++ED ++
Sbjct:   10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIRRDANDELKKLEKNGEITEDELR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 71/147 (48.30%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D + RME+ I  +   F+ +RTGR++ +++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++
Sbjct:    9 DAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLR 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 71/147 (48.30%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D + RME+ I  +   F+ +RTGR++ +++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++
Sbjct:    9 DAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLR 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.904e-37
Identity = 72/145 (49.66%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            D++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P  +  +A I+ P+   L IQP+DK++LK I++A+  SDLG++P+NDG +IRL +P LT ERRKEL K+  K  EE KVA+RNIRRDA    +KL+K   +SED+
Sbjct:    8 DMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAKVAIRNIRRDANDEIKKLEKAATISEDD 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_ENTFA (Ribosome-recycling factor OS=Enterococcus faecalis GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 72/145 (49.66%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +M +  + +R     +R GR+N ++LD+I+VEYYG+P  +  +A IN P++  L+I P+DK+S+  IEKAI  SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE  KVAVRN+RRDA+   +K QK   ++ED ++
Sbjct:   10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVRRDAMDELKKAQKNGDITEDELR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DESHD (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 75/147 (51.02%), Postives = 106/147 (72.11%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVK 154          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_RUBXD1.702e-3750.34Ribosome-recycling factor OS=Rubrobacter xylanophi... [more]
RRF_CLOPH1.702e-3747.62Ribosome-recycling factor OS=Clostridium phytoferm... [more]
RRF_LISW62.904e-3750.34Ribosome-recycling factor OS=Listeria welshimeri s... [more]
RRF_GEOKA2.904e-3748.97Ribosome-recycling factor OS=Geobacillus kaustophi... [more]
RRF_DESVV2.904e-3748.30Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_DESVH2.904e-3748.30Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_BREBN2.904e-3749.66Ribosome-recycling factor OS=Brevibacillus brevis ... [more]
RRF_ENTFA4.953e-3749.66Ribosome-recycling factor OS=Enterococcus faecalis... [more]
RRF_DESHY4.953e-3751.02Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_DESHD4.953e-3751.02Ribosome-recycling factor OS=Desulfitobacterium ha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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