CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CALS8 (Ribosome-recycling factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.953e-37
Identity = 71/144 (49.31%), Postives = 106/144 (73.61%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKD 787
            +M++ I+ ++  F +VR GR+NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  +DLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+A+  Y+K++K  +++ED++KD
Sbjct:   11 KMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREAIDEYKKMKKNNEITEDDLKD 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.449e-37
Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K R E++   +   F S+R GR+N ++LD+IEVEYYG P  L  +A I  P++  LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L
Sbjct:   10 KERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSL 156          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_EUBR3 (Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=frr PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.449e-37
Identity = 70/145 (48.28%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +ME+T++ +   +  +R GR+NP +LDK+ V+YYG+P  ++S+A ++ P+   + IQP++ S +K IEKAI  SD+G+ P NDG++IRL  P+LT ERRK+L+K + K+ EE KVAVRNIRRDA+ + +K  KE+ +SED +K L
Sbjct:   11 KMEKTLNNLEEEYAGIRAGRANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMIQIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGL 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CLOD6 (Ribosome-recycling factor OS=Clostridium difficile (strain 630) GN=frr PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.449e-37
Identity = 74/146 (50.68%), Postives = 106/146 (72.60%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            ++ +M  TID ++  F ++R GR+N  MLDKI V+YYG+P  +  I  I+ P+   L+I P+DKS++  IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K  +K AEE KV +RN RRDA +  +K++K  +L+ED +K
Sbjct:    9 LEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKVRIRNERRDANEKIKKMEKGGELTEDELK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LISMO (Ribosome-recycling factor OS=Listeria monocytogenes GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.103e-36
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LISMH (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.103e-36
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKSGDITEDDLR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LISMF (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain F2365) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.103e-36
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LISMC (Ribosome-recycling factor OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=frr PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.103e-36
Identity = 73/145 (50.34%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_BACSU (Ribosome-recycling factor OS=Bacillus subtilis GN=frr PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.103e-36
Identity = 73/145 (50.34%), Postives = 104/145 (71.72%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +ME+ I   +    +VR GR+NP++LDK+ VEYYG+   L  ++ IN P++  L+I PYDK+++  IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVRN+RRDA    +KL+K   ++ED ++
Sbjct:   10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVRRDANDDLKKLEKNGDITEDELR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.441e-36
Identity = 74/145 (51.03%), Postives = 103/145 (71.03%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            R E++   +   + S+R GR+N ++LD+I+VEYYG P  L  +A I  P++  LLI P+DKSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L
Sbjct:   12 RFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKAL 156          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CALS84.953e-3749.31Ribosome-recycling factor OS=Caldicellulosiruptor ... [more]
RRF_STRMU8.449e-3751.70Ribosome-recycling factor OS=Streptococcus mutans ... [more]
RRF_EUBR38.449e-3748.28Ribosome-recycling factor OS=Eubacterium rectale (... [more]
RRF_CLOD68.449e-3750.68Ribosome-recycling factor OS=Clostridium difficile... [more]
RRF_LISMO1.103e-3650.34Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMH1.103e-3650.34Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMF1.103e-3650.34Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_LISMC1.103e-3650.34Ribosome-recycling factor OS=Listeria monocytogene... [more]
RRF_BACSU1.103e-3650.34Ribosome-recycling factor OS=Bacillus subtilis GN=... [more]
RRF_STRU01.441e-3651.03Ribosome-recycling factor OS=Streptococcus uberis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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