CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DESDG (Ribosome-recycling factor OS=Desulfovibrio desulfuricans (strain G20) GN=frr PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.458e-36
Identity = 68/147 (46.26%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + + RME+ +  +   F  +RTGR++ +++D I+V+YYG+P  +  +A +  PDS ++ IQP+D+ +   +EKAI+ SDLG+TP NDG++IR+++P LT ERRKEL KV  K  E+ KVAVRNIRRDA +  +K++K+K ++ED++K
Sbjct:    7 ETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSRTITIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTEDAKVAVRNIRRDANEQIKKMEKDKAITEDDMK 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_THETN (Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 72/147 (48.98%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D + RM++T++++++   ++R GR+NPA+LD+I V YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+AEE ++AVR IRRDA    +K++K+ ++SED  K
Sbjct:    7 DSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVLVVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEARIAVRQIRRDANDLVKKMEKDGEISEDERK 153          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LAWIP (Ribosome-recycling factor OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 71/147 (48.30%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            D + RM + I  +   F  +RTGR++ +++D I+V+YYG+P  +  +A I  PDSSS+ IQP+DK++   IEKAI+ S+LG+TP NDG++IR+TLP LT +RRK+L K+  K  E+ K+A+RNIRRDA +  ++L+K K +SED +K
Sbjct:   11 DSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARKYGEDTKIAIRNIRRDANEQLKRLEKNKFISEDELK 157          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LACDA (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 73/147 (49.66%), Postives = 108/147 (73.47%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K  M ++I++ ++N  +VR G +N ++LD++ VEYYG P  L  +A I  P+   L+I PYDK+SL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L
Sbjct:   10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRL 156          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 71/145 (48.97%), Postives = 105/145 (72.41%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            K +M++ +        +VR GR+N  +L+K+ V+YYG    +  +A I+ P++  L+IQPYDKS +K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +EE KVAVRNIRRDA    +KL+K  +++ED ++
Sbjct:   10 KEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELR 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CLOK5 (Ribosome-recycling factor OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 71/143 (49.65%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CLOK1 (Ribosome-recycling factor OS=Clostridium kluyveri (strain NBRC 12016) GN=frr PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.210e-36
Identity = 71/143 (49.65%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +M +T+D++     S++ GR+NPA+LDKIEVEYYG+   +  +A I+ P++  L IQP+DKS+LKSIEKAI+ SDLG+ P+NDGE+IRL +P+LT E RK + K + K  E+ KVA+R IRR+    ++ L+K+  +SED +K
Sbjct:   12 KMNKTVDVLVKELASMKAGRANPAILDKIEVEYYGAMTPISQLAGISIPEARILAIQPWDKSALKSIEKAILKSDLGINPSNDGEIIRLIIPELTEETRKNIVKNIKKTGEDSKVAIRGIRRECNDKFKALKKKNDISEDEIK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LEPIN (Ribosome-recycling factor OS=Leptospira interrogans GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 70/148 (47.30%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSV 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LEPIC (Ribosome-recycling factor OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 70/148 (47.30%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSV 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LEPBL (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 71/148 (47.97%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTI 155          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESDG2.458e-3646.26Ribosome-recycling factor OS=Desulfovibrio desulfu... [more]
RRF_THETN3.210e-3648.98Ribosome-recycling factor OS=Thermoanaerobacter te... [more]
RRF_LAWIP3.210e-3648.30Ribosome-recycling factor OS=Lawsonia intracellula... [more]
RRF_LACDA3.210e-3649.66Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_GEOTN3.210e-3648.97Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_CLOK53.210e-3649.65Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_CLOK13.210e-3649.65Ribosome-recycling factor OS=Clostridium kluyveri ... [more]
RRF_LEPIN4.193e-3647.30Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_LEPIC4.193e-3647.30Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_LEPBL4.193e-3647.97Ribosome-recycling factor OS=Leptospira borgpeters... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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