CV712551

Overview
NameCV712551
Unique NameCV712551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_LEPBJ (Ribosome-recycling factor OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 71/148 (47.97%), Postives = 110/148 (74.32%), Query Frame = 2
Query:  347 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            +K +M++TID+V+ +F +VRTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P+NDG VIR+ +P+LT ERRKEL+K+V  ++EE KVA+RNIRRDA++  +K    + LS+D +K +
Sbjct:   10 MKTKMDKTIDLVKKDFGTVRTGRANPSLVEDIRVDYYGTLTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQASGLGLQPSNDGVVIRIIIPELTGERRKELAKIVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGLSQDEIKTI 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_HALOH (Ribosome-recycling factor OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 66/145 (45.52%), Postives = 112/145 (77.24%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDN 778
            + K +ME+ ++  + + N+VRTGR+ P++++ I V+YYG+   ++ +A++  P++  L+I+P+DKS ++SIEKAI+ S+LG+ P+NDG VIR+ +PQLT ERRKEL KV  ++AE+G++A+RNIRR+A    ++++K  ++SEDN
Sbjct:    8 NAKQKMEKVLEATKHDLNTVRTGRARPSLVENIMVDYYGTQTPIQQMAKVVAPEARQLVIEPWDKSVIESIEKAILKSNLGLNPSNDGNVIRINIPQLTEERRKELVKVAHEKAEKGRIAIRNIRREANDELKEMEKNSEISEDN 152          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_BDEBA (Ribosome-recycling factor OS=Bdellovibrio bacteriovorus GN=frr PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.193e-36
Identity = 77/147 (52.38%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            + +A+ME+T++ +      VRTGR+  +MLD I V YYG+P  L  +A I+TPD+ S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K AEE +VAVR  RRDA    +KLQK+K +SED  K
Sbjct:    9 NAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDAKSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARVAVRMARRDANDEVKKLQKDKAVSEDEGK 155          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DEHSC (Ribosome-recycling factor OS=Dehalococcoides sp. (strain CBDB1) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 68/143 (47.55%), Postives = 106/143 (74.13%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +M  ++D++    + +RTGRS+PA+++ I VEY G P  +  +A I+ PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K
Sbjct:   12 KMSASLDVLLQELSGIRTGRSSPALVEHIRVEYAGVPTPINHLANISAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKIVNKRLEEDKIAMRNVRRDAMDEMKKLEKAKEISQDDLK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_DEHE1 (Ribosome-recycling factor OS=Dehalococcoides ethenogenes (strain 195) GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 68/143 (47.55%), Postives = 107/143 (74.83%), Query Frame = 2
Query:  356 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +M  ++D++    + +RTGRS+PA+++ I+VEY G P  +  +A I  PD   + IQP+D+S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+A+RN+RRDA+   +KL+K K++S+D++K
Sbjct:   12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWDRSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAMRNVRRDAMDEMKKLEKSKEISQDDLK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.476e-36
Identity = 71/147 (48.30%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  344 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVK 784
            +++ +M ++I  ++    S++ GR+NPAMLD+IEV+YYG+   L  +A I+ P+S  L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG  +RL +P+LT E RK + K V K  E+GKVA+R IRRDA    + L+K+  ++ED +K
Sbjct:    8 ELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIRRDANDKVKSLKKDNSITEDEMK 154          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRTD (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTL 156          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRT2 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTL 156          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRT1 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain CNRZ 1066) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTL 156          
BLAST of CV712551 vs. ExPASy Swiss-Prot
Match: RRF_STRPZ (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.152e-36
Identity = 72/147 (48.98%), Postives = 104/147 (70.75%), Query Frame = 2
Query:  350 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDL 790
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L
Sbjct:   10 KERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTL 156          
The following BLAST results are available for this feature:
BLAST of CV712551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LEPBJ4.193e-3647.97Ribosome-recycling factor OS=Leptospira borgpeters... [more]
RRF_HALOH4.193e-3645.52Ribosome-recycling factor OS=Halothermothrix oreni... [more]
RRF_BDEBA4.193e-3652.38Ribosome-recycling factor OS=Bdellovibrio bacterio... [more]
RRF_DEHSC5.476e-3647.55Ribosome-recycling factor OS=Dehalococcoides sp. (... [more]
RRF_DEHE15.476e-3647.55Ribosome-recycling factor OS=Dehalococcoides ethen... [more]
RRF_CLOAB5.476e-3648.30Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_STRTD7.152e-3649.66Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT27.152e-3649.66Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT17.152e-3649.66Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRPZ7.152e-3648.98Ribosome-recycling factor OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712551 ID=CV712551; Name=CV712551; organism=Citrus sinensis; type=EST; length=795bp
AAGACACTCATTTTGAACCAACTAATTTCTTAAGTCTGAGCGAGCGTTCA
TGGCCACGCACTTTTCTTCAACAGGGCCCATGCGGTCCATTTTCCAACTG
AAATCAAATCCTCCCAAATGCCTCCTTTTCCTCCCTGATTCTTGTCATAG
AAGAGCCGAAACTGCCACGTGCCGTGCTAGCAGCGTTAGTGTGCGCCAGT
GGAGCTCAACTGCAAACTACTCTAGACTTGTGAAATTATCCAACAAACCT
ATCGTTGTAAGACAACTGGCACACAAGAGAAATGGAGTTGTGAGGTGTGC
AACTATTGAAGAAATTGAAGCGGAAAAATCTTCCATTGAGAAGGATGTTA
AAGCTAGGATGGAAAGGACTATCGATATGGTCCGAACCAATTTCAATTCC
GTGAGGACAGGAAGATCGAATCCAGCTATGCTAGATAAGATTGAGGTGGA
ATACTATGGAAGCCCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCC
CTGATTCAAGTTCTCTATTGATTCAACCATATGACAAATCCAGCTTAAAG
TCTATAGAGAAGGCCATAGTAAGCTCTGATCTTGGCATGACCCCAAACAA
TGATGGTGAAGTCATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGA
GGAAGGAACTGTCAAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTG
GCAGTTAGGAATATAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCA
GAAGGAGAAGAAGCTCTCTGAAGACAATGTGAAGGACTTGTCAAG
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