CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CYAP4 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=frr PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.253e-49
Identity = 92/167 (55.09%), Postives = 131/167 (78.44%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            DV+  M+++++  +  FN++RTGR+N ++LD++ VEYYG+   L+S+A I+TPDSS++ IQP+D++SL  IEKAI  SDLG+TPNNDG VIRL +P LTS+RRKEL K  +K AEEGKV++RN+RRDA+ + +K  K  +LSED VKDL   +QKLTD+Y+ K+D +
Sbjct:    5 DVEDHMQKSVEATQRAFNTIRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDRNSLNLIEKAISMSDLGLTPNNDGTVIRLNIPPLTSDRRKELVKTASKLAEEGKVSIRNVRRDAVDSVKKQGKAGELSEDEVKDLQDKIQKLTDKYIAKVDGL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CYAP7 (Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7424) GN=frr PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.647e-49
Identity = 90/167 (53.89%), Postives = 130/167 (77.84%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            +V+  M++TI+  + +FN++RTGR+N A+LD++ V+YYG+   LKS+A I TPD++++ IQPYD+ S+  IEKAI  SD+G+TPNNDG++IRL +P LT+ERRKEL K+  K AEEGKVA+RNIRRDA+ +  K +K  +LSED  ++L  ++QK+TDEY  KID +
Sbjct:    5 EVQDNMQKTIESTQRSFNTIRTGRANSALLDRVMVDYYGTETPLKSLANITTPDATTIAIQPYDRGSMGQIEKAIQLSDIGLTPNNDGQMIRLNIPPLTTERRKELVKLAGKLAEEGKVAIRNIRRDAIDSVRKQEKNHELSEDESRNLQDEIQKVTDEYTAKIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNY3 (Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803) GN=frr PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.220e-49
Identity = 91/167 (54.49%), Postives = 129/167 (77.25%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            ++K  M+++++  + +FN++RTGR+N ++LD+I VEYYG+   LKS+A I TPD+S+++IQP+D  S+ +IEKAI  SDLG+TPNNDG+VIRL +P LT+ERRKEL KV  K AEEGKVA+RNIRRDA+    K +K   +SED  +DL  ++QKLTD+  K+ID +
Sbjct:    5 ELKDHMQKSVEATQRSFNTIRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQPFDMGSIGTIEKAISLSDLGLTPNNDGKVIRLNIPPLTAERRKELVKVAGKLAEEGKVAIRNIRRDAVDEVRKQEKNSDISEDEARDLQEEIQKLTDQSTKRIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_NOSP7 (Ribosome-recycling factor OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=frr PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.061e-48
Identity = 89/167 (53.29%), Postives = 131/167 (78.44%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D K++M+ +++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD+S++LIQPY++++L  IEKAI  SD+G+TP+NDG VIRL +P LTS+RRKE  K+  K AEEG+VA+RNIRRDA+ +  K +K  ++S+D  KD   +LQKLT+EY  +ID++
Sbjct:    5 DAKSKMQSSVESTQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDASTILIQPYERNTLNIIEKAISLSDVGLTPSNDGSVIRLNIPPLTSDRRKEFVKMATKYAEEGRVAIRNIRRDAIDSIRKQEKASEISKDESKDQQDNLQKLTNEYTSRIDAL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_TRIEI (Ribosome-recycling factor OS=Trichodesmium erythraeum (strain IMS101) GN=frr PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.982e-48
Identity = 89/167 (53.29%), Postives = 127/167 (76.05%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + + +M++ I+  + +FN+VRTGR+N ++LD++ VEYYGSP  LKS+A I  PD+S++ IQPYDK+SL  IEKAI  SD+G+TPNNDG +IRL +P LT+ERR+E+ K  AK AEEGKV++RNIRRDA+ +  K +K   +S+D  +DL   +QK TD+Y+ KID +
Sbjct:    5 EAEEKMQKAIEATKNSFNTVRTGRANASLLDRVMVEYYGSPTQLKSMANIGIPDASTITIQPYDKTSLGLIEKAINMSDVGLTPNNDGSIIRLNIPALTAERRQEMVKKTAKLAEEGKVSIRNIRRDAVDSIRKQEKNSDISKDESRDLQDKVQKKTDKYIAKIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CYAA5 (Ribosome-recycling factor OS=Cyanothece sp. (strain ATCC 51142) GN=frr PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.982e-48
Identity = 86/167 (51.50%), Postives = 127/167 (76.05%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D+K  M+++++  + +FN++RTGR+N ++LD++ VEYYG+   L  +A I+TPD+++++IQPYDK S+  IEKAI  SD+G+TPNNDG+VIRL +P LT ERRK+L K+ +K AEEGKVA+RNIRRDA+    K +K   +SED  + L  D+QK+TD++  KID +
Sbjct:    5 DLKENMQKSVEATQRSFNTIRTGRANASILDRVTVEYYGTETPLYQLANISTPDATTIMIQPYDKGSMGQIEKAIQMSDVGLTPNNDGQVIRLNIPPLTEERRKDLVKLASKMAEEGKVAIRNIRRDAIDDVRKQEKNSDISEDESRGLQDDIQKVTDQFTDKIDEL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNP2 (Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=frr PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.001e-47
Identity = 89/169 (52.66%), Postives = 126/169 (74.56%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            +++  M++TI+  + +FN++RTGR++ ++LD+I VEYYG+   LKS+A I+TPDSS+++IQP+D+ SL  +E+AI  SDLG+TPNNDG  IRL +P LT ERR+EL K   K AEEGKVA+RNIRRDA+    K +K   +SED  + L  D+QK+TDE+  KID + K
Sbjct:    5 ELRENMQKTIEATQRSFNTLRTGRASASLLDRITVEYYGAETPLKSLASISTPDSSTIMIQPFDRGSLSDVERAISMSDLGLTPNNDGTNIRLNIPPLTKERRQELVKTAGKLAEEGKVALRNIRRDAIDDVRKQEKNSDISEDESRSLQDDIQKVTDEFTTKIDDLLK 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.458e-47
Identity = 89/170 (52.35%), Postives = 126/170 (74.12%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            D K RM++ ID++      +R GR+NPA+LD++ VEYYG+   L  +A +  P++  LLI PYDK+++ SIEKAI+ SDLG+TP+NDG+VIR+ +P LT ERRK+L ++V+K AEE KVAVRNIRRDA    +KLQK+ +++ED ++  + D+QKLTD Y+ KID   KQ
Sbjct:    8 DAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEESKVAVRNIRRDANDELKKLQKDGEMTEDELRSATDDIQKLTDTYVAKIDEKAKQ 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_MICAN (Ribosome-recycling factor OS=Microcystis aeruginosa (strain NIES-843) GN=frr PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.931e-47
Identity = 87/167 (52.10%), Postives = 131/167 (78.44%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            +V+ +M++T++  +  FN++RTGR+N ++LD+I VEYYG    LKS+A I+TPD++++ IQP+D++S+ +IEKAI  SD+G+TP+NDG+ IRL +P LTS+RRKEL K+ AK AEEGKVA+RNIRRDA+ A  K +K  ++SED  +DL   +QK TD+++ KI+ +
Sbjct:    5 EVQDQMQKTVESTQRAFNTIRTGRANASLLDRIVVEYYGMETPLKSLATISTPDATTIAIQPFDRTSMGAIEKAISLSDVGLTPSNDGQTIRLNIPPLTSDRRKELVKLAAKLAEEGKVAIRNIRRDAIDAIRKREKGHEISEDESRDLQDQVQKSTDKFIAKIEDL 171          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNS3 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311) GN=frr PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.297e-46
Identity = 84/165 (50.91%), Postives = 125/165 (75.76%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D++A M ++++  + NFN++RTGR+NP++LD+I VEYYG+   LKS+A ++TPDS ++ +QP+D  SL  IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ AK +EEGKVA+R++RRDA+   +K +KE  LSED  +D    +QK TD ++ +++
Sbjct:    5 DLEANMRKSVEATQRNFNTIRTGRANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAVQPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVALRSVRRDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELE 169          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_CYAP41.253e-4955.09Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_CYAP73.647e-4953.89Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNY36.220e-4954.49Ribosome-recycling factor OS=Synechocystis sp. (st... [more]
RRF_NOSP71.061e-4853.29Ribosome-recycling factor OS=Nostoc punctiforme (s... [more]
RRF_TRIEI8.982e-4853.29Ribosome-recycling factor OS=Trichodesmium erythra... [more]
RRF_CYAA58.982e-4851.50Ribosome-recycling factor OS=Cyanothece sp. (strai... [more]
RRF_SYNP22.001e-4752.66Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_BACSK4.458e-4752.35Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_MICAN9.931e-4752.10Ribosome-recycling factor OS=Microcystis aeruginos... [more]
RRF_SYNS31.297e-4650.91Ribosome-recycling factor OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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