CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEGPC (Ribosome-recycling factor OS=Legionella pneumophila (strain Corby) GN=frr PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 78/167 (46.71%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RM++TI+ + T+ + +RTGR+N ++LD + V+YYGSP  L  +A I T DS ++L+ P++KS + +IEKAI++SDLG+ P   G  IR+ +P LT ERRKEL KVV  + E+G+V++RNIRRDA    ++L KEK +SED+ +  +  +QKLTD Y+ ++D++
Sbjct:    8 DSEKRMKKTIEALHTDMSKIRTGRANASLLDHVMVDYYGSPTPLSQVANITTSDSRTILVTPWEKSMVAAIEKAILNSDLGLNPATAGTAIRVPMPPLTEERRKELIKVVRHEGEQGRVSIRNIRRDANNQLKELVKEKAISEDDERRAAEAIQKLTDRYISEVDAV 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOBL (Ribosome-recycling factor OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=frr PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.774e-41
Identity = 84/163 (51.53%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M +TI  ++    S++ GR+NPAMLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   12 KMGKTIVALKRELASMKAGRANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRS7 (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=frr PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.235e-41
Identity = 81/163 (49.69%), Postives = 116/163 (71.17%), Query Frame = -3
Query:  185 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 673
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STREM (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=frr PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.235e-41
Identity = 81/163 (49.69%), Postives = 116/163 (71.17%), Query Frame = -3
Query:  185 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 673
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRE4 (Ribosome-recycling factor OS=Streptococcus equi subsp. equi (strain 4047) GN=frr PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 6.235e-41
Identity = 81/163 (49.69%), Postives = 116/163 (71.17%), Query Frame = -3
Query:  185 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 673
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   10 KERFTQSHHSLAREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNFM (Ribosome-recycling factor OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=frr PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.143e-41
Identity = 77/168 (45.83%), Postives = 122/168 (72.62%), Query Frame = -3
Query:  176 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 679
            D + RM + +D + T++  +RTGR++ +++D I  EYYG+P +L  +A I  P+  +++IQP+D S +  IEK+I+ S+LG+TP +DG+VIR+ +P LT++RR+EL KVV K +EE KVAVRNIRRD  +  + L+KEK++SED       + Q++TD+++KKID +Y
Sbjct:    8 DARDRMSKALDNLETDYKRLRTGRASVSLVDGIRAEYYGTPTALNQLATITIPEPRTIMIQPWDTSVIGEIEKSILKSELGLTPMSDGKVIRINIPVLTADRRRELVKVVKKMSEESKVAVRNIRRDVNEMIKDLKKEKEISEDEQFKAQEETQRITDDFIKKIDVVY 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LACLA (Ribosome-recycling factor OS=Lactococcus lactis subsp. lactis GN=frr PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.143e-41
Identity = 76/163 (46.63%), Postives = 119/163 (73.01%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            RM++++  ++ +   +R GR+N ++LD+++V YYG+P  L  +A I  P++  L++ P+DKS LK IEKA+  SDLG+TP NDG VIRL +P LT ERR+EL K + K  E  KVA+RNIRRDA+   +K +K K+++ED++KDL +++QK+TD+ +K+ D +
Sbjct:   12 RMKQSLGSLQRDLGHIRAGRANASLLDRVQVVYYGAPTPLNQLASITIPEARVLMVTPFDKSILKDIEKALYESDLGITPANDGSVIRLVIPMLTEERRRELVKEMGKYIESAKVAIRNIRRDAMDTAKKSEKAKEITEDDLKDLENNIQKVTDDAVKEADRL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_IDILO (Ribosome-recycling factor OS=Idiomarina loihiensis GN=frr PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.143e-41
Identity = 79/169 (46.75%), Postives = 122/169 (72.19%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D K RME++++ +R+  + VRTGR++P++LD + V YYG+   LK +A I T DS +L +  +DKS+  ++EKAI++SDLG+ P + G VIR+ LP LT ERR++L K+V  +AE G++AVRNIRRDA    + L KEK+++ED  ++   ++QKLTD+++K+ID   K
Sbjct:    8 DAKDRMEKSVESLRSQMSKVRTGRAHPSILDSVMVNYYGTDTPLKQLANITTEDSRTLALTVFDKSASAAVEKAIINSDLGLNPASAGAVIRIPLPPLTEERRRDLVKIVRAEAENGRIAVRNIRRDANGDIKDLLKEKEITEDEERNAEEEIQKLTDKFVKQIDEALK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRA5 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype V GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 79/163 (48.47%), Postives = 114/163 (69.94%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            R E++   +   F  +R GR+N ++LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRA3 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype III GN=frr PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.063e-40
Identity = 79/163 (48.47%), Postives = 114/163 (69.94%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            R E++   +   F  +R GR+N ++LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   12 RFEQSHQSLSREFAGIRAGRANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LEGPC4.774e-4146.71Ribosome-recycling factor OS=Legionella pneumophil... [more]
RRF_CLOBL4.774e-4151.53Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_STRS76.235e-4149.69Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STREM6.235e-4149.69Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STRE46.235e-4149.69Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_SYNFM8.143e-4145.83Ribosome-recycling factor OS=Syntrophobacter fumar... [more]
RRF_LACLA8.143e-4146.63Ribosome-recycling factor OS=Lactococcus lactis su... [more]
RRF_IDILO8.143e-4146.75Ribosome-recycling factor OS=Idiomarina loihiensis... [more]
RRF_STRA51.063e-4048.47Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_STRA31.063e-4048.47Ribosome-recycling factor OS=Streptococcus agalact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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