CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROMM (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9313) GN=frr PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.694e-46
Identity = 86/165 (52.12%), Postives = 126/165 (76.36%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            ++K  M ++++  + NF ++RTGR+NP++LD+I VEYYG+   LKS+A I+TPDS ++ IQP+D  S+  IEKAI +SDLG+TPNNDG++IR+ +P LT ERRKE  K+ A+ AEEGKVA+RNIRRDA+   +KL+K+ +LS+D   D    +QKLTD ++ +I+
Sbjct:    5 ELKDNMHKSVEATQRNFATIRTGRANPSLLDRINVEYYGTETPLKSLATISTPDSQTIAIQPFDNGSMGLIEKAIATSDLGLTPNNDGKIIRINVPPLTEERRKEFCKLAARYAEEGKVALRNIRRDAIDKVKKLEKDAELSKDQSHDEQDGIQKLTDTFITEIE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROMT (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL2A) GN=frr PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.889e-46
Identity = 88/165 (53.33%), Postives = 123/165 (74.55%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            ++K  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D    +QK TD ++K I+
Sbjct:    5 ELKTTMSKSIEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROM4 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9211) GN=frr PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.889e-46
Identity = 85/165 (51.52%), Postives = 127/165 (76.97%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            +++  M ++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS ++ IQP+D SSL  IEK+I  SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA++  +K +KE ++SED  +D   ++QKLTD ++ +I+
Sbjct:    5 ELEQNMRKSVEAAQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTISIQPFDLSSLVLIEKSIAMSDLGFTPNNDGKIIRINIPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAIERIKKSEKESEISEDQSRDEQDNVQKLTDRFITEIE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROM1 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL1A) GN=frr PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.437e-46
Identity = 87/165 (52.73%), Postives = 123/165 (74.55%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            ++K  M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D    +QK TD ++K I+
Sbjct:    5 ELKNTMSKSVEAAQRNFNTIRTGRANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNWW (Ribosome-recycling factor OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=frr PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.098e-45
Identity = 91/167 (54.49%), Postives = 126/167 (75.45%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RM++TI+ +R +  S+R GR+NPAML+KI V+YYG P  +  +A I  P++  L+IQP+DK+ + SIEKAI+ SDLG+ P+NDG VIRL +PQLT ERRKEL KV+ K+AEE +VAVRNIRRD+ +  +  +KEK +SED+ K    D+QK TD ++K+IDSI
Sbjct:    8 DTEERMKKTIEHLRKDLASLRAGRANPAMLEKIMVDYYGQPTPINQLANITVPEARLLVIQPWDKTIIASIEKAIMKSDLGINPSNDGNVIRLVIPQLTEERRKELVKVLRKRAEEARVAVRNIRRDSNELLKSGEKEKLISEDDNKKGMDDIQKETDRHIKEIDSI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACLD (Ribosome-recycling factor OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=frr PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.434e-45
Identity = 88/169 (52.07%), Postives = 123/169 (72.78%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            + K RM++ I   +    +VR GR+NP++LDK+ VEYYG+   L  IA I  P++  L+I PYDK++L  IEKAI  +DLG+TP+NDG +IR+T+P LT ERRKEL+K+V K +E+ KVAVRNIRRDA    +KL+K  +++ED ++  + D+QKLTDEY+ KID I K
Sbjct:    8 ETKERMQKAISAYQRELATVRAGRANPSLLDKVAVEYYGAQTPLNQIASITVPEARMLVITPYDKTALGDIEKAIQKADLGVTPSNDGNIIRITIPPLTEERRKELAKLVKKYSEDAKVAVRNIRRDANDDLKKLEKNGEMTEDELRSSTEDVQKLTDEYVSKIDEITK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PELTS (Ribosome-recycling factor OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=frr PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.873e-45
Identity = 85/167 (50.90%), Postives = 126/167 (75.45%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + ++ M++TI++V+  F S+R GR+ PA+LDK+ V YYG+P  +  +A I+ P++  L++QP+DK+ L  IE+AI+ SDLG+TP +DG VIRL +PQLT ERR EL KV+ K+AEEG+VA+RNIRRD  +  +  QK+ K+SED +K    ++QKLTD Y+K+IDS+
Sbjct:    8 EAESNMKKTIEVVKKEFASLRAGRATPALLDKVMVNYYGTPTPVNQLANISVPEARLLVVQPWDKTVLPEIERAILKSDLGITPASDGNVIRLAIPQLTQERRAELMKVIKKKAEEGRVAIRNIRRDTNEQLKSQQKDGKMSEDELKRSQDEVQKLTDRYIKEIDSL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ALKMQ (Ribosome-recycling factor OS=Alkaliphilus metalliredigens (strain QYMF) GN=frr PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.873e-45
Identity = 81/166 (48.80%), Postives = 130/166 (78.31%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            ++ +M +T+ +++ +FNS+R G++NP+MLD+I V+YYGS   LK +A ++ P+   L+IQPYD S +  IEKA++ SDLG+ P+NDG++IRL +PQLT ERRKEL+KVV + AEEG+VA+RN RRDA +  +K++K+ +L+ED++K    ++QK+TD++ K++D +
Sbjct:    9 LEEKMTKTLGVLKDDFNSIRAGKANPSMLDRITVDYYGSITPLKQVASVSAPEPRLLIIQPYDPSVINGIEKALMMSDLGLNPSNDGKIIRLNIPQLTEERRKELTKVVKRVAEEGRVALRNGRRDANEQLKKMEKDSELTEDDLKQAQEEVQKITDKFNKQVDEM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GEOSW (Ribosome-recycling factor OS=Geobacillus sp. (strain WCH70) GN=frr PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.449e-45
Identity = 84/168 (50.00%), Postives = 126/168 (75.00%), Query Frame = -3
Query:  170 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 673
            K +M++ +        ++R GR+NP++L+K+ V+YYG P  +  +A I+ P++  L+IQPYDKS +K IEKAI+SSDLG+TP+NDG VIR+T+P LT ERR+EL K+V K +E+ KVAVRNIRRDA    +KL+K  +++ED ++  + D+QKLTD+++ KID+I K+
Sbjct:   10 KEKMDKAVQAFTRELATIRAGRANPSLLEKVTVDYYGMPTPIIQLASISVPEARLLVIQPYDKSVIKDIEKAILSSDLGLTPSNDGSVIRITIPPLTEERRRELVKLVKKYSEDAKVAVRNIRRDANDELKKLEKNGEITEDELRGYTDDVQKLTDDHIAKIDAITKE 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNSC (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605) GN=frr PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.117e-45
Identity = 83/165 (50.30%), Postives = 125/165 (75.76%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D    +QK  D+++ +++
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELE 169          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMM1.694e-4652.12Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROMT2.889e-4653.33Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM42.889e-4651.52Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM16.437e-4652.73Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_SYNWW1.098e-4554.49Ribosome-recycling factor OS=Syntrophomonas wolfei... [more]
RRF_BACLD1.434e-4552.07Ribosome-recycling factor OS=Bacillus licheniformi... [more]
RRF_PELTS1.873e-4550.90Ribosome-recycling factor OS=Pelotomaculum thermop... [more]
RRF_ALKMQ1.873e-4548.80Ribosome-recycling factor OS=Alkaliphilus metallir... [more]
RRF_GEOSW5.449e-4550.00Ribosome-recycling factor OS=Geobacillus sp. (stra... [more]
RRF_SYNSC7.117e-4550.30Ribosome-recycling factor OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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