CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACA2 (Ribosome-recycling factor OS=Bacillus amyloliquefaciens (strain FZB42) GN=frr PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.214e-44
Identity = 86/167 (51.50%), Postives = 120/167 (71.86%), Query Frame = -3
Query:  173 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 673
            K RME+ +        SVR GR+NP++LDK+ VEYYG+   L  ++ IN P++  L++ PYDK+++  IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVRN+RRD+    +KL+K   ++ED ++  S D+QKLTDEY+ KIDS+ K
Sbjct:   10 KERMEKAVAAYSRELASVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVVTPYDKTAIGDIEKAILKADLGVTPTSDGTIIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVRRDSNDDLKKLEKNGDITEDELRASSEDVQKLTDEYVSKIDSVTK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNPW (Ribosome-recycling factor OS=Synechococcus sp. (strain WH7803) GN=frr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.071e-44
Identity = 82/165 (49.70%), Postives = 124/165 (75.15%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D+++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L  IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D    +QK  D+++ +++
Sbjct:    5 DLESSMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALALIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRDAQDSVQKTLDKFIAEVE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GLOVI (Ribosome-recycling factor OS=Gloeobacter violaceus GN=frr PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.071e-44
Identity = 85/164 (51.83%), Postives = 124/164 (75.61%), Query Frame = -3
Query:  173 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 664
            M + I+    NF ++RTGR++ ++LD+I VEYYG P  LK++A I TPD+S++LIQPYD SSL+ IEK I+ SDLG+ P+NDG+ IRL +P LT+ERRK+L KV+   AEEG+VAVRNIRR A+    K +K+ K+SED  + L  ++QKLTD+ +++I+ +++
Sbjct:   10 MRKAIEATAGNFATIRTGRASTSLLDRINVEYYGQPTPLKTLATITTPDASTVLIQPYDPSSLRLIEKTILESDLGLPPSNDGKTIRLNIPPLTAERRKDLVKVLRNLAEEGRVAVRNIRRHAIDEVRKEEKDAKVSEDEARRLQDEVQKLTDKSIQQIEKLFE 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACSU (Ribosome-recycling factor OS=Bacillus subtilis GN=frr PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.071e-44
Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  173 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 673
            K +ME+ I   +    +VR GR+NP++LDK+ VEYYG+   L  ++ IN P++  L+I PYDK+++  IEKAI+ +DLG+TP +DG +IR+ +P LT ERRKEL KVV K AEE KVAVRN+RRDA    +KL+K   ++ED ++  + D+QKLTDEY+ KIDS+ K
Sbjct:   10 KEKMEKAIAAYQRELATVRAGRANPSLLDKVTVEYYGAQTPLNQLSSINVPEARMLVITPYDKTAIGDIEKAILKADLGLTPTSDGNMIRIAIPALTEERRKELVKVVKKYAEEAKVAVRNVRRDANDDLKKLEKNGDITEDELRASTEDVQKLTDEYVSKIDSVTK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44
Identity = 85/166 (51.20%), Postives = 128/166 (77.11%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D SSL++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S+D  +D   ++QK TD+Y+  I++
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIET 170          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44
Identity = 86/165 (52.12%), Postives = 124/165 (75.15%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D + RM +  + +      +R GR+NPAMLD+I VEYYG+   L  +A I+ P++  L+IQP+DKSS+  IE+AI  SDLG+TP+NDG VIR+T+P LT ERR++L+K+V K AEE KVAVRNIRRDA    +K QK+ +L+ED+++ ++ D+QKLTD+Y+++ID
Sbjct:    8 DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVAVRNIRRDANDDLKKRQKDGELTEDDLRRVTEDVQKLTDKYIEQID 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNPX (Ribosome-recycling factor OS=Synechococcus sp. (strain WH8102) GN=frr PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.532e-44
Identity = 82/165 (49.70%), Postives = 124/165 (75.15%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK  D+++ +++
Sbjct:    5 DLEASMRKSVEATQRNFNTIRTGRANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDAVQKTLDKFIAELE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNS9 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9902) GN=frr PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.613e-44
Identity = 82/165 (49.70%), Postives = 124/165 (75.15%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D++A M ++++  + NFN++RTGR+N ++LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S L +IEKAI  S+LG TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +K+   SED  +D    +QK+ D+++ +++
Sbjct:    5 DLEASMRKSLEATQRNFNTIRTGRANSSLLDRISVEYYGADTPLKSLATLSTPDSQTIQIQPFDISGLAAIEKAIAMSELGFTPNNDGKVIRINVPPLTEERRKEFCKMASKYAEEGKVALRNLRRDAIDKVKKQEKDGDFSEDQSRDEQDSVQKVLDKFIVELE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LISW6 (Ribosome-recycling factor OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=frr PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.025e-44
Identity = 85/167 (50.90%), Postives = 122/167 (73.05%), Query Frame = -3
Query:  173 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 673
            K +M++    +     ++R GR+N ++LD++ V+YYG+P  +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K ID+I K
Sbjct:   10 KEKMDKAEQALTRQLGTIRAGRANASLLDRLSVDYYGAPTPVNQMASISVPEARMLLITPYDKTVLGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDNITK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.868e-44
Identity = 81/168 (48.21%), Postives = 125/168 (74.40%), Query Frame = -3
Query:  170 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 673
            K +M++ +        S+R GR+N  +L+K+ V+YYG P  +  +A I+ P++  L+IQPYDKS++K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +E+ KVAVRNIRRDA    +KL+K  +++ED ++  + ++QKLTD+++ KID+I K+
Sbjct:   10 KEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAVRNIRRDANDELKKLEKNGEITEDELRSYTDEVQKLTDDHIAKIDAITKE 177          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BACA21.214e-4451.50Ribosome-recycling factor OS=Bacillus amyloliquefa... [more]
RRF_SYNPW2.071e-4449.70Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_GLOVI2.071e-4451.83Ribosome-recycling factor OS=Gloeobacter violaceus... [more]
RRF_BACSU2.071e-4451.50Ribosome-recycling factor OS=Bacillus subtilis GN=... [more]
RRF_PROMP2.704e-4451.20Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_BACHD2.704e-4452.12Ribosome-recycling factor OS=Bacillus halodurans G... [more]
RRF_SYNPX3.532e-4449.70Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_SYNS94.613e-4449.70Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_LISW66.025e-4450.90Ribosome-recycling factor OS=Listeria welshimeri s... [more]
RRF_GEOKA7.868e-4448.21Ribosome-recycling factor OS=Geobacillus kaustophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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