CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SALPA (Ribosome-recycling factor OS=Salmonella paratyphi A GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 73/166 (43.98%), Postives = 116/166 (69.88%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            D + RME+ ++  +T  + VRTGR++P++LD I VEYYG+   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G  I + LP LT ERRK+L+K+V  +AE+ +VAVRN+RRDA    + L K+K +SED+ +    ++QK+TD  +KK+D+
Sbjct:    8 DAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEYYGTLTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDICVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEVQKMTDAAIKKVDA 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_MYCLE (Ribosome-recycling factor OS=Mycobacterium leprae GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 69/169 (40.83%), Postives = 111/169 (65.68%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D + +ME+ + + R + + +RTGR+NP M  ++ ++YYGS   +  +A IN P++  ++I+PYD   L +IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR  ++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:    8 DAEEKMEKAVSVAREDLSMIRTGRANPGMFSRLVIDYYGSATPITQLASINVPEARLVVIKPYDAIQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKCKGEDAKVSVRNIRRKVMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVIQIDELVK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_MYCLB (Ribosome-recycling factor OS=Mycobacterium leprae (strain Br4923) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 69/169 (40.83%), Postives = 111/169 (65.68%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D + +ME+ + + R + + +RTGR+NP M  ++ ++YYGS   +  +A IN P++  ++I+PYD   L +IE AI +SDLG+ P+NDG +IR+ +PQLT ERR+EL K    + E+ KV+VRNIRR  ++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:    8 DAEEKMEKAVSVAREDLSMIRTGRANPGMFSRLVIDYYGSATPITQLASINVPEARLVVIKPYDAIQLHAIETAIRNSDLGVNPSNDGTLIRVAVPQLTEERRRELVKQAKCKGEDAKVSVRNIRRKVMEELHRIRKDGEAGEDEVSRAEKDLDKTTHQYVIQIDELVK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ERYLH (Ribosome-recycling factor OS=Erythrobacter litoralis (strain HTCC2594) GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 65/166 (39.16%), Postives = 116/166 (69.88%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            D++ RM   ++ ++++ + +RTGR+N ++LD + VE YG+ + L  +A +N P+   L +Q +DK+++ ++EK I  ++LG+ P  DG+ +RL +P LT ERRKEL+K+  + AE+ K+A+RN+RRD ++  +  +K K +SED+ K +  ++QKLTD+Y+ + DS
Sbjct:    8 DIERRMAGAVESLKSDLSGLRTGRANTSLLDPVVVEVYGAMMPLNQVATVNAPEPRMLAVQVWDKANVSAVEKGITKANLGLNPMTDGQTVRLPMPDLTEERRKELAKLAGQYAEKAKIAIRNVRRDGMEDLKADEKAKDISEDDRKRMEDEVQKLTDKYVAEADS 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESPS (Ribosome-recycling factor OS=Desulfotalea psychrophila GN=frr PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.887e-36
Identity = 72/167 (43.11%), Postives = 115/167 (68.86%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            ++  RM ++++  + + + VRTGR++ ++LD I V  YGS + L  +A +  P+S  + +QP+D   +  IEKAI+ S LG+ P NDG+V+RL +PQLT +RRK+L K V K AEE +VA+RN+RRDA+   +  +K+K++SED++  L  D QK TD Y+K++D +
Sbjct:    7 EMSGRMAKSVEAFKNDLSRVRTGRASISILDDITVVAYGSTMPLNQVATLTIPESRMIALQPWDPQMIPPIEKAILKSGLGLNPVNDGKVVRLNIPQLTEDRRKDLVKQVKKIAEEFRVAIRNVRRDAIDTLKLQKKDKEISEDDLFKLQDDAQKETDIYIKQLDEV 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_RUTMC (Ribosome-recycling factor OS=Ruthia magnifica subsp. Calyptogena magnifica GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 68/166 (40.96%), Postives = 116/166 (69.88%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            D ++RM +++  ++  F+ +R  R++ ++L++I V+YYGS V L  +A I+  DS +  + P++K  +  IEKAI++S+LG+ P   G+++R+ LP LT ERR EL K+V  +AE+ KVA+RNIRRDA   +++L KEK++S D  +   + +QK+TD Y+K+I++
Sbjct:    8 DAQSRMNKSVASLKNAFSKIRANRAHSSLLEQIHVDYYGSMVPLSQVANISVEDSRTFKVSPWEKDMVAVIEKAIMTSNLGLNPQTMGQIMRIPLPPLTQERRGELVKIVKDEAEQAKVAIRNIRRDANSDFKELLKEKEISRDGARKAENSIQKITDTYIKEIEA 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_RICCN (Ribosome-recycling factor OS=Rickettsia conorii GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 70/170 (41.18%), Postives = 116/170 (68.24%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            +++ +ME+ + ++      +RTGR++  +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERR  L K+  K  E+ K+++RNIRRD  +A +KL+K+  +++D    LS  +QKLTD+Y  K+DS+ KQ
Sbjct:    9 NLQEKMEKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRTALVKLAHKYGEDTKISLRNIRRDGNEALKKLEKDNVIAKDEHHSLSEQVQKLTDDYSSKVDSVIKQ 178          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GEOBB (Ribosome-recycling factor OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 69/166 (41.57%), Postives = 115/166 (69.28%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            +   M+++I+ +R  +  VRTGR++ ++LD I+V+ YG+   L  +A +  P++ ++ I P+D   +  IEKAI++S+LG+ P NDG++IRLTLP LT ERRK++ K + + AE+ KVA+RNIRRDA+   +KL+K+K +SED  K    ++Q  T+ ++ K+D +
Sbjct:    9 MNVHMDKSIESLRKEYQKVRTGRASTSLLDDIKVDSYGTLSPLNQVATLAIPEARTITISPWDSKMIAPIEKAIMNSNLGLNPANDGKMIRLTLPPLTEERRKDIVKQLKRDAEDAKVALRNIRRDAIDQLKKLEKDKSISEDEQKRAEKEVQDFTNSHVAKVDEV 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_AZOSB (Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.030e-35
Identity = 72/166 (43.37%), Postives = 114/166 (68.67%), Query Frame = -3
Query:  170 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 667
            +M+++ID ++T+   +RTGR++  +LD + VEYYGS V +  +A I   D+ ++ +Q ++K  L  +EKAI   DLG+ P N GE+IR+ +P LT ERR++L+KVV ++ E  KVAVRN+RRDA +  +   K+K +SED+ +    D+QKLTD+Y+ +ID +  Q
Sbjct:   12 KMQKSIDALKTDLAKIRTGRAHTGLLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQEGETAKVAVRNLRRDANQHLKDAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQ 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_RICFE (Ribosome-recycling factor OS=Rickettsia felis GN=frr PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.345e-35
Identity = 70/170 (41.18%), Postives = 116/170 (68.24%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            +++ +M++ + ++      +RTGR++  +LD + VE YGS + L  +A ++TPD+ ++ +Q +DKS + S+EK I  ++LG+TP  DG++IRL +P LT ERRKEL K+  K  E+ K+++RNIRRD  +  +KL+K+  +++D    LS  +QKLTD+Y  K+DS  KQ
Sbjct:    9 NLQEKMDKALKVLDHELKGLRTGRASVNLLDSVTVEAYGSKMPLSQVASLSTPDARTINVQVWDKSMVSSVEKGITIANLGLTPATDGQLIRLPIPALTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKDNIIAKDEHHSLSEQVQKLTDDYSSKVDSAIKQ 178          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SALPA7.887e-3643.98Ribosome-recycling factor OS=Salmonella paratyphi ... [more]
RRF_MYCLE7.887e-3640.83Ribosome-recycling factor OS=Mycobacterium leprae ... [more]
RRF_MYCLB7.887e-3640.83Ribosome-recycling factor OS=Mycobacterium leprae ... [more]
RRF_ERYLH7.887e-3639.16Ribosome-recycling factor OS=Erythrobacter litoral... [more]
RRF_DESPS7.887e-3643.11Ribosome-recycling factor OS=Desulfotalea psychrop... [more]
RRF_RUTMC1.030e-3540.96Ribosome-recycling factor OS=Ruthia magnifica subs... [more]
RRF_RICCN1.030e-3541.18Ribosome-recycling factor OS=Rickettsia conorii GN... [more]
RRF_GEOBB1.030e-3541.57Ribosome-recycling factor OS=Geobacter bemidjiensi... [more]
RRF_AZOSB1.030e-3543.37Ribosome-recycling factor OS=Azoarcus sp. (strain ... [more]
RRF_RICFE1.345e-3541.18Ribosome-recycling factor OS=Rickettsia felis GN=f... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
back to top