CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_METRJ (Ribosome-recycling factor OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=frr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 69/167 (41.32%), Postives = 113/167 (67.66%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D+K RM+  +  +  +  S+RTGR+ P++LD I+V+ YGS + +  +A ++ P+   L I  +D+S + ++EKAI  SDLG+ P  +G+ IRL +P++  +RRKE+ KV  K  EE +VAVR++RRD L   +KL K+  +SED+ K  ++D+QK TD+Y+ +ID +
Sbjct:   10 DIKRRMQGAVASLSKDLGSLRTGRATPSLLDPIQVDAYGSMMPMAQVATVSVPEPRLLSISVWDRSMVTAVEKAIRESDLGLNPQTEGQTIRLRIPEMNEQRRKEMVKVAHKYTEEARVAVRHVRRDGLDHLKKLLKDSAISEDDEKRQATDVQKATDQYIAEIDGV 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_FRAAA (Ribosome-recycling factor OS=Frankia alni (strain ACN14a) GN=frr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 65/169 (38.46%), Postives = 111/169 (65.68%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D + +ME+ + + + +F ++RTGR  PA+  KI V+YYG+P  ++ +A  + P+   ++I PYDKSSL SIEKA+  SDLG+ P+NDG +IR+  P+L+ +RR++L KV   +AEE +V++RN+RR A    +++ ++    ED  +    DL + T  Y+ ++D + +
Sbjct:    8 DAEEKMEKAVSVAKEDFANIRTGRITPAVFSKIVVDYYGAPTPVQQLASFHIPEPRMVIITPYDKSSLASIEKAVRDSDLGVNPSNDGTIIRIVFPELSEQRRRDLVKVARSKAEEARVSIRNVRRHAKDGIDRIVRDGDAGEDEGRRAEKDLDEATHRYVGQVDELLR 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESAH (Ribosome-recycling factor OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=frr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 67/168 (39.88%), Postives = 116/168 (69.05%), Query Frame = -3
Query:  176 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 679
            + + RM +++  +      VRTGR++  MLD ++V+YYG+   L  +A I  P+S  + +QP+D S++K +EK I+ +++G+TP++DG++IR+T+P LT +RR+E++K V    EE KVAVRNIRRD+    + LQK+  +SED       ++Q +TDE++K+I++++
Sbjct:    8 ETRDRMVKSVKTLEKEMTRVRTGRASMTMLDGVKVDYYGTLTPLNQMASIAIPESRMITVQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTVHNTCEEFKVAVRNIRRDSNDTLKSLQKDGDISEDENFKAQKEVQDITDEFIKQIEAVF 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.997e-35
Identity = 71/164 (43.29%), Postives = 115/164 (70.12%), Query Frame = -3
Query:  176 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 667
            +M+R +  + + + S+RTGR + A+ DK+ V+YYG    L  +A I+ P++  ++IQP+DKS L  IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K   K AEE KVA RN+R++     +K +K+ +++ED+++ +  D+Q+ T+ Y+KKID I+
Sbjct:   11 KMDRVLLSLDSEYKSLRTGRISSALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_VEREI (Ribosome-recycling factor OS=Verminephrobacter eiseniae (strain EF01-2) GN=frr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 69/163 (42.33%), Postives = 113/163 (69.33%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            RM+++I   R N   +RTGR+NPA+LD ++V+YYG+ V L  +A +   D+ ++ +QP++K     IEKAI  SDLG+ P   G++IR+ +P ++ ERRKE++K+   + E  K+AVRN+RRDA ++ +KL K+K  SED  K   +++QK TD+++ +ID++
Sbjct:   13 RMDQSIAAFRNNLQKIRTGRANPALLDAVQVDYYGALVPLSQVANVALIDARTISVQPWEKGMGAKIEKAIRDSDLGLNPAAMGDLIRVPMPPMSQERRKEMTKLARNEGESAKIAVRNLRRDANESIKKLVKDKLASEDEQKRAETEVQKFTDKHIAEIDAL 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SACEN (Ribosome-recycling factor OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=frr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 68/165 (41.21%), Postives = 111/165 (67.27%), Query Frame = -3
Query:  173 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 667
            +M++ +++ +    +VRTGR+NPAM   I V+YYGSP  L  +A I+ P++  ++I+PYD S L ++EKAI  SDLG+ P+NDG++IR+++PQ+T ERRKE+ K+   + EEG++ VR IRR   +  +++ K+ +  ED       +L+ LT  Y+ +ID + K
Sbjct:   12 KMQKAVEVAKDELATVRTGRANPAMFSGIVVDYYGSPTPLNQLASISVPEARLVVIKPYDASQLGAMEKAIRDSDLGVNPSNDGQLIRVSIPQMTEERRKEMVKLAKHKGEEGRITVRGIRRKVKEEIDRIVKDGEAGEDEGTRGEKELENLTHRYVAQIDELVK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_RENSM (Ribosome-recycling factor OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=frr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 65/170 (38.24%), Postives = 116/170 (68.24%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            + + +M++ +++ + +F++VRTGR+NP +  K+ V+YYG+P  L+ +A    P++ +LLI P+D+S+L  IEKA+ +S++G  P+NDG VIR+ +P+LT ERR+E  K+V  ++E+ K+++RNIRR A ++ +K+ K+    ED       +L  LT  + + ID + K+
Sbjct:    8 EAEEKMDKAVEVAKEDFSAVRTGRANPGLFAKVMVDYYGAPTPLQQLASFAVPEARTLLITPFDRSALGDIEKALSNSEVGANPSNDGNVIRVVMPELTQERRREYVKIVRGKSEDAKISIRNIRRKAKESLDKIVKDGDAGEDEGSRAEKELDGLTKTHTENIDELLKR 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_NITSB (Ribosome-recycling factor OS=Nitratiruptor sp. (strain SB155-2) GN=frr PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.914e-35
Identity = 67/165 (40.61%), Postives = 117/165 (70.91%), Query Frame = -3
Query:  170 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 664
            M++++D+++ +FN++RTGR   A+++ I+V+YYG+P  L   A +   D+++++I P+DKS L  IE+AI  +++G+ PNNDG+ I+L  P +T E+R+  +K   +  E+ K+A+RN+RRDA    +KL K+K ++ED  K    ++QK+TDE++KK+D + KQ
Sbjct:   14 MQKSLDVLKKDFNTLRTGRVTTAVVENIKVDYYGAPTPLNQAASVVAADATTIVISPWDKSLLGEIERAIQEANIGVNPNNDGDQIKLFFPPMTVEQREAEAKKAKQFGEKAKIAIRNVRRDANDKIKKLFKDKAITEDEEKRGLEEVQKITDEFIKKVDDLVKQ 178          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_RHOP5 (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain BisA53) GN=frr PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.112e-35
Identity = 70/167 (41.92%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            ++K RM+     ++     +RTGR++ +ML+ ++V+ YG+ + L  +A I+ P+   L +Q +DKS +K++EKAIV S+LG++P+ +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ + L+ D+QK+TD  ++++D +
Sbjct:   10 ELKRRMQGATHALQHELGGLRTGRASSSMLEPVQVDAYGTHMPLIQVATISVPEPRLLSVQVWDKSMIKAVEKAIVDSNLGLSPSTEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTLKKLEKNHEISEDDQERLAHDVQKVTDATIQEVDQL 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.677e-35
Identity = 72/167 (43.11%), Postives = 114/167 (68.26%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + +A +++  + +R +  S+RTGR++ A+++ + VE YG  + L  +A I+ P+   ++IQPYD + +K+IEKAI  SDLG+ P+NDG VIRL +P LT ERR+EL K+V  + EE K++VRN RRDA+   +KL+ EK +SED +      +Q+LTD   +++D I
Sbjct:    8 EYEAHLKKATEALRHHLASIRTGRASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_METRJ2.997e-3541.32Ribosome-recycling factor OS=Methylobacterium radi... [more]
RRF_FRAAA2.997e-3538.46Ribosome-recycling factor OS=Frankia alni (strain ... [more]
RRF_DESAH2.997e-3539.88Ribosome-recycling factor OS=Desulfobacterium auto... [more]
RRF_BORHD2.997e-3543.29Ribosome-recycling factor OS=Borrelia hermsii (str... [more]
RRF_VEREI3.914e-3542.33Ribosome-recycling factor OS=Verminephrobacter eis... [more]
RRF_SACEN3.914e-3541.21Ribosome-recycling factor OS=Saccharopolyspora ery... [more]
RRF_RENSM3.914e-3538.24Ribosome-recycling factor OS=Renibacterium salmoni... [more]
RRF_NITSB3.914e-3540.61Ribosome-recycling factor OS=Nitratiruptor sp. (st... [more]
RRF_RHOP55.112e-3541.92Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_CHLSY6.677e-3543.11Ribosome-recycling factor OS=Chloroflexus aurantia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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