CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROMA (Ribosome-recycling factor OS=Prochlorococcus marinus GN=frr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 80/165 (48.48%), Postives = 124/165 (75.15%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            +V+  M+++++  + NFN++RTGR+N ++LD++ VEYYG+   LKS+A I+TPDS +L IQP+D  SL  IEKAI  SDLG TPNNDG++IR+ +P LT ERRK+  K+ +K AEE K+++RNIRRDA++  +  +K+ + SED  +D    +QK+T++Y+ +I+
Sbjct:    5 EVELNMQKSVEACQRNFNTIRTGRANTSLLDRLTVEYYGADTPLKSLATISTPDSQTLAIQPFDLGSLGLIEKAISISDLGFTPNNDGKIIRINIPPLTEERRKQFCKLASKYAEEAKISLRNIRRDAIEKIKGSEKDGEFSEDQSRDQQDSIQKITNKYINEIE 169          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROM5 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9515) GN=frr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 84/166 (50.60%), Postives = 125/166 (75.30%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            ++++ M ++++  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I T DS ++ IQP+D S L++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S D  +D   ++QK TD+Y+  I++
Sbjct:    5 EIQSSMNKSVEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLASIATVDSQTISIQPFDISCLQAIEKAISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISIDESRDNQLEIQKFTDKYISLIET 170          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_NATTJ (Ribosome-recycling factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 81/167 (48.50%), Postives = 123/167 (73.65%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + +M++ +  +++   S+R GR+NP++L+ I V+YYG    L  +A I+ P+   L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++ E+ KV VRN+RRDA    +KL+KEK++SED       ++QK+TD+Y+KKID +
Sbjct:    7 DAEQKMKKALSSLKSELASLRAGRANPSILEGINVDYYGMATPLNQLANISAPEPRLLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGEDTKVVVRNVRRDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEV 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LISIN (Ribosome-recycling factor OS=Listeria innocua GN=frr PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 86/167 (51.50%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  173 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 673
            K +ME+    +     ++R GR+N ++LD++ V+YYG+   +  +A I+ P++  LLI PYDK+ L  IEKAI+ SDLG+TPNNDG V+RL++PQLT ERRKEL K V K+AEE KVAVRNIRR+A +  +KL+K   ++ED+++    D+QKLTDE +K IDSI K
Sbjct:   10 KEKMEKAEQALTRQLGTIRAGRANASLLDRLTVDYYGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSIPQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEDLKKLEKNGDITEDDLRSYGEDVQKLTDESIKNIDSITK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROM2 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9215) GN=frr PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.990e-43
Identity = 82/166 (49.40%), Postives = 127/166 (76.51%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            +++  M ++I+  + NFN++RTGR+N ++LD++ V+YYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+TD+Y+  I++
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRVSVDYYGAETPIKSLATISTIDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITDKYIALIET 170          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ENTFA (Ribosome-recycling factor OS=Enterococcus faecalis GN=frr PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.905e-43
Identity = 82/165 (49.70%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K +M +  + +R     +R GR+N ++LD+I+VEYYG+P  +  +A IN P++  L+I P+DK+S+  IEKAI  SD+G++P NDG VIRL +PQLT ERRKEL+K V K+AE  KVAVRN+RRDA+   +K QK   ++ED ++    D+QKLTD+ +K ID+I
Sbjct:   10 KEKMTKAEESLRRELGQIRAGRANASLLDRIQVEYYGAPTPVNQLASINIPEARVLMITPFDKNSIADIEKAIQMSDIGISPTNDGNVIRLVIPQLTEERRKELAKDVKKEAENSKVAVRNVRRDAMDELKKAQKNGDITEDELRSFEKDVQKLTDDSIKNIDAI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 86/165 (52.12%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K R E++   +   F S+R GR+N ++LD+IEVEYYG P  L  +A I  P++  LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L  D+QK+TDE +K IDS+
Sbjct:   10 KERFEQSHQSLAREFGSIRAGRANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESHD (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.661e-43
Identity = 84/167 (50.30%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK    D+QK+TD+++K+ID I
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_PROM9 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain MIT 9312) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 82/166 (49.40%), Postives = 127/166 (76.51%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            +++  M ++I+  + NFN++RTGR+N ++LD+I VEYYG+   +KS+A I+T DS ++ IQP+D S L++IEK+I  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +K+  +S D  +D  S++QK+T++++  I++
Sbjct:    5 EIQENMNKSIEATQRNFNTIRTGRANASLLDRISVEYYGAETPIKSLATISTVDSQTISIQPFDISCLQAIEKSISMSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKDGLISIDESRDNQSEIQKITNKFIALIET 170          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 80/165 (48.48%), Postives = 122/165 (73.94%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D + RME+ +  +   F  +RTGR++ +++D I+V+YYG+P  +  +A ++ PDS +L IQP+D+S+ + +EKAI+ SDLG+ P NDG++IR+++P LT ERRK+L KV  K  EE KVAVRN+RRDA  A +KL+K K++SED+V+  + D+QKLTD ++ K D
Sbjct:    9 DAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSD 173          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMA1.753e-4348.48Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM51.753e-4350.60Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_NATTJ1.753e-4348.50Ribosome-recycling factor OS=Natranaerobius thermo... [more]
RRF_LISIN1.753e-4351.50Ribosome-recycling factor OS=Listeria innocua GN=f... [more]
RRF_PROM22.990e-4349.40Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_ENTFA3.905e-4349.70Ribosome-recycling factor OS=Enterococcus faecalis... [more]
RRF_STRMU6.661e-4352.12Ribosome-recycling factor OS=Streptococcus mutans ... [more]
RRF_DESHD6.661e-4350.30Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_PROM98.700e-4349.40Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_DESVM8.700e-4348.48Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
back to top