CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESRM (Ribosome-recycling factor OS=Desulfotomaculum reducens (strain MI-1) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 85/164 (51.83%), Postives = 122/164 (74.39%), Query Frame = -3
Query:  173 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 664
            M++++D+VR  F S+R GR+ P++LDK+ V YYG+P  L  +A I+ P++  L+IQP+DKS +  +EKAI+ SD+G+TP++DG VIRL +PQLT ERR EL KV+ K+AEEG+VAVRNIRRD   + +  QK+  + ED  K    +LQKLTD+Y+K+ID + K
Sbjct:   13 MKKSVDVVRREFASLRAGRATPSILDKVTVSYYGTPTPLNQLANISVPEARVLVIQPWDKSVIPEVEKAILKSDVGITPSSDGTVIRLIIPQLTQERRTELVKVIKKKAEEGRVAVRNIRRDTNDSIKAKQKD-GIPEDEAKRGQDELQKLTDKYVKEIDEMVK 175          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BDEBA (Ribosome-recycling factor OS=Bdellovibrio bacteriovorus GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 85/170 (50.00%), Postives = 122/170 (71.76%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            + +A+ME+T++ +      VRTGR+  +MLD I V YYG+P  L  +A I+TPD+ S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K AEE +VAVR  RRDA    +KLQK+K +SED  K   +D+QK+TD+++KK+D + ++
Sbjct:    9 NAQAKMEKTLNSLSEELKKVRTGRAQVSMLDGIRVNYYGTPSPLSQVASISTPDAKSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEE 178          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_ANATD (Ribosome-recycling factor OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=frr PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.700e-43
Identity = 79/163 (48.47%), Postives = 120/163 (73.62%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M++ I+ ++  F ++R GR+NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  SDLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+AL  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   11 KMKKAIETLKEEFATIRAGRANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.484e-42
Identity = 81/168 (48.21%), Postives = 122/168 (72.62%), Query Frame = -3
Query:  170 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 673
            K +M++ +        +VR GR+N  +L+K+ V+YYG    +  +A I+ P++  L+IQPYDKS +K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +EE KVAVRNIRRDA    +KL+K  +++ED ++  + ++QKLTD ++ KID+I K+
Sbjct:   10 KEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKE 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.484e-42
Identity = 75/165 (45.45%), Postives = 125/165 (75.76%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            + +M++++D ++  +  +R GR+NP +LDK+ V+YYG+P +++++A ++ P++  + IQP++   +K IEKAI++SDLG+TP+NDG+VIRL  P+LT ERRK+L K V K+AE  KVAVRN+RRDA  A +KL K  ++SED  K +  ++QK+TD+++ ++D +
Sbjct:    9 EGKMQKSLDSLKEEYVGIRAGRANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKVAVRNVRRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKV 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BACP2 (Ribosome-recycling factor OS=Bacillus pumilus (strain SAFR-032) GN=frr PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.484e-42
Identity = 83/167 (49.70%), Postives = 117/167 (70.06%), Query Frame = -3
Query:  173 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 673
            K +ME+ +        +VR GR+N ++LDK+ V+YYG+   L  IA I  P++  L+I PYDK+++  IEK+I  SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVRN+RRDA    +KL+K  +++ED ++  + D+QKLTDEY+ KID + K
Sbjct:   10 KEKMEKAVQAYGRELATVRAGRANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_EUBR3 (Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=frr PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.938e-42
Identity = 78/162 (48.15%), Postives = 120/162 (74.07%), Query Frame = -3
Query:  182 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 667
            +ME+T++ +   +  +R GR+NP +LDK+ V+YYG+P  ++S+A ++ P+   + IQP++ S +K IEKAI  SD+G+ P NDG++IRL  P+LT ERRK+L+K + K+ EE KVAVRNIRRDA+ + +K  KE+ +SED +K L  D QKLTD+++ K+D+
Sbjct:   11 KMEKTLNNLEEEYAGIRAGRANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMIQIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDA 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.938e-42
Identity = 83/167 (49.70%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            + + RM + ++ ++  + ++R GR+NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK    D+QK+TD+++K+I+ I
Sbjct:    8 EAEDRMVKAVEALKREYATIRAGRANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERI 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOD6 (Ribosome-recycling factor OS=Clostridium difficile (strain 630) GN=frr PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.531e-42
Identity = 81/166 (48.80%), Postives = 122/166 (73.49%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            ++ +M  TID ++  F ++R GR+N  MLDKI V+YYG+P  +  I  I+ P+   L+I P+DKS++  IEKAI +SDLG+ P+NDGEVIRL++P LT ERRKEL+K  +K AEE KV +RN RRDA +  +K++K  +L+ED +K    ++QK+TD+++K+ID++
Sbjct:    9 LEEKMNGTIDALKFEFGTIRAGRANAQMLDKIRVDYYGTPTPINQIGAISVPEPRILMISPWDKSAMHEIEKAIANSDLGLNPSNDGEVIRLSVPALTEERRKELAKKASKAAEEFKVRIRNERRDANEKIKKMEKGGELTEDELKKAQDEVQKMTDKFIKEIDTL 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESVV (Ribosome-recycling factor OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=frr PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.306e-42
Identity = 79/165 (47.88%), Postives = 119/165 (72.12%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D + RME+ I  +   F+ +RTGR++ +++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:    9 DAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESRM8.700e-4351.83Ribosome-recycling factor OS=Desulfotomaculum redu... [more]
RRF_BDEBA8.700e-4350.00Ribosome-recycling factor OS=Bdellovibrio bacterio... [more]
RRF_ANATD8.700e-4348.47Ribosome-recycling factor OS=Anaerocellum thermoph... [more]
RRF_GEOTN1.484e-4248.21Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_CLOPH1.484e-4245.45Ribosome-recycling factor OS=Clostridium phytoferm... [more]
RRF_BACP21.484e-4249.70Ribosome-recycling factor OS=Bacillus pumilus (str... [more]
RRF_EUBR31.938e-4248.15Ribosome-recycling factor OS=Eubacterium rectale (... [more]
RRF_DESHY1.938e-4249.70Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_CLOD62.531e-4248.80Ribosome-recycling factor OS=Clostridium difficile... [more]
RRF_DESVV3.306e-4247.88Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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