CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_DESVH (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=frr PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.306e-42
Identity = 79/165 (47.88%), Postives = 119/165 (72.12%), Query Frame = -3
Query:  185 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 679
            D + RME+ I  +   F+ +RTGR++ +++D I+V+YYG+P  +  +A +  PDS  + IQP+D+++   IEKAI+ SDLG+ P NDG++IR+ +P LT ERRK+L K+  K AEE KVAVRN+RRDA +  +KL+K K+LSED+++    D+QKLTD ++ K D
Sbjct:    9 DAEERMEKAIAALEREFSRLRTGRASASLVDGIKVDYYGTPTPISQVASVAVPDSRCITIQPWDRNAFSLIEKAILKSDLGLNPVNDGKIIRINIPPLTEERRKDLGKMARKYAEEAKVAVRNVRRDANEQLKKLEKNKELSEDDLRKAQEDVQKLTDRFVAKTD 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THETN (Ribosome-recycling factor OS=Thermoanaerobacter tengcongensis GN=frr PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 81/167 (48.50%), Postives = 123/167 (73.65%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D + RM++T++++++   ++R GR+NPA+LD+I V YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL LP+LT ERRKEL K+V K+AEE ++AVR IRRDA    +K++K+ ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:    7 DSEERMKKTLNVLKSELAAIRAGRANPALLDRITVNYYGTPTPLNRLATITAPEPRVLVVQPWDVSQIGEIEKAIQKSDLGINPVSDGKVLRLVLPELTEERRKELVKLVHKKAEEARIAVRQIRRDANDLVKKMEKDGEISEDERKRREEEIQKLTDKYIKEIDKM 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LAWIP (Ribosome-recycling factor OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=frr PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 78/166 (46.99%), Postives = 122/166 (73.49%), Query Frame = -3
Query:  182 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 679
            D + RM + I  +   F  +RTGR++ +++D I+V+YYG+P  +  +A I  PDSSS+ IQP+DK++   IEKAI+ S+LG+TP NDG++IR+TLP LT +RRK+L K+  K  E+ K+A+RNIRRDA +  ++L+K K +SED +K  + D+QK+TD Y+K++++
Sbjct:   11 DSQERMVKAITSLEKEFTKLRTGRASTSIVDTIKVDYYGTPTPINQLASIAIPDSSSITIQPWDKTAFNPIEKAILKSELGLTPINDGKIIRITLPPLTEDRRKDLVKLARKYGEDTKIAIRNIRRDANEQLKRLEKNKFISEDELKGFTEDIQKMTDNYIKEVET 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LACDB (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=frr PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.318e-42
Identity = 83/165 (50.30%), Postives = 121/165 (73.33%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K  M ++I++ ++N  +VR G +N ++LD++ VEYYG P  L  +A I  P+   L+I PYDKSSL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L  ++QK+TDE  KKID +
Sbjct:   10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 80/167 (47.90%), Postives = 121/167 (72.46%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            +++ +M ++I  ++    S++ GR+NPAMLD+IEV+YYG+   L  +A I+ P+S  L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG  +RL +P+LT E RK + K V K  E+GKVA+R IRRDA    + L+K+  ++ED +K   +D+QK TD Y+K+ID +
Sbjct:    8 ELEEKMTKSISALKKELTSMKAGRANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CALS8 (Ribosome-recycling factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=frr PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.639e-42
Identity = 78/163 (47.85%), Postives = 120/163 (73.62%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M++ I+ ++  F +VR GR+NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  +DLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+A+  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   11 KMKKAIETLKEEFATVRAGRANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_CARHZ (Ribosome-recycling factor OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=frr PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 7.365e-42
Identity = 81/169 (47.93%), Postives = 123/169 (72.78%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            + +  M++ I++++  F ++R GR+ PA+L+K+ VEYYG+ + +  +A I+ P+   L+IQP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+AEE +VA+RNIRRDA    + L+K+K +SED  K    ++QKLTD+++K +D + K
Sbjct:    8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVIQPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVAIRNIRRDANDRIKDLEKDKVISEDEGKRGQDEVQKLTDKFIKTVDELLK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THEPX (Ribosome-recycling factor OS=Thermoanaerobacter sp. (strain X514) GN=frr PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 80/163 (49.08%), Postives = 119/163 (73.01%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M++++ +++    ++R GR+NPA+LD+I V+YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL  P+LT ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   11 KMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_THEP3 (Ribosome-recycling factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=frr PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 80/163 (49.08%), Postives = 119/163 (73.01%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            +M++++ +++    ++R GR+NPA+LD+I V+YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL  P+LT ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   11 KMQKSLSVLKNELAAIRAGRANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LACDA (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=frr PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 82/165 (49.70%), Postives = 121/165 (73.33%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K  M ++I++ ++N  +VR G +N ++LD++ VEYYG P  L  +A I  P+   L+I PYDK+SL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L  ++QK+TDE  KKID +
Sbjct:   10 KRNMNKSIEVYQSNLATVRAGVANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQM 174          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_DESVH3.306e-4247.88Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_THETN4.318e-4248.50Ribosome-recycling factor OS=Thermoanaerobacter te... [more]
RRF_LAWIP4.318e-4246.99Ribosome-recycling factor OS=Lawsonia intracellula... [more]
RRF_LACDB4.318e-4250.30Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_CLOAB5.639e-4247.90Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_CALS85.639e-4247.85Ribosome-recycling factor OS=Caldicellulosiruptor ... [more]
RRF_CARHZ7.365e-4247.93Ribosome-recycling factor OS=Carboxydothermus hydr... [more]
RRF_THEPX9.619e-4249.08Ribosome-recycling factor OS=Thermoanaerobacter sp... [more]
RRF_THEP39.619e-4249.08Ribosome-recycling factor OS=Thermoanaerobacter ps... [more]
RRF_LACDA9.619e-4249.70Ribosome-recycling factor OS=Lactobacillus delbrue... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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