CV712550

Overview
NameCV712550
Unique NameCV712550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.256e-41
Identity = 82/163 (50.31%), Postives = 115/163 (70.55%), Query Frame = -3
Query:  179 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 667
            R E++   +   + S+R GR+N ++LD+I+VEYYG P  L  +A I  P++  LLI P+DKSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK TD+ +K ID +
Sbjct:   12 RFEQSFQSLSREYASIRAGRANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_BREBN (Ribosome-recycling factor OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=frr PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.256e-41
Identity = 79/169 (46.75%), Postives = 121/169 (71.60%), Query Frame = -3
Query:  173 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 679
            D++ RM + I+ ++ + +S+R GR+NPAMLD++ V+YYG+P  +  +A I+ P+   L IQP+DK++LK I++A+  SDLG++P+NDG +IRL +P LT ERRKEL K+  K  EE KVA+RNIRRDA    +KL+K   +SED+ +     +QK TD+++ ++D I K
Sbjct:    8 DMEDRMNKAINALKRDLSSLRAGRANPAMLDRVTVDYYGTPTPISQLANISVPEPRMLTIQPWDKTALKEIDRALQQSDLGISPSNDGVIIRLIIPPLTEERRKELVKLAGKGGEEAKVAIRNIRRDANDEIKKLEKAATISEDDSRRHQETIQKTTDKFIAEVDKIVK 176          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRTD (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=frr PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRT2 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=frr PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRT1 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain CNRZ 1066) GN=frr PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.641e-41
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = -3
Query:  179 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 673
            K R   T + +   F ++R GR+N ++LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   10 KERFAHTHESLAREFGAIRAGRANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_SYNAS (Ribosome-recycling factor OS=Syntrophus aciditrophicus (strain SB) GN=frr PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 80/170 (47.06%), Postives = 119/170 (70.00%), Query Frame = -3
Query:  170 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 679
            ++K  ME+ +  +  +FN VRTGR++ ++LD I+ +YYG+P  L  +A ++ P+S  +LI P+D S+L +IEKAI  SDLG+ PNNDG+VIR+++P LT  RRKEL KVV K AEE KV +RN RRDA + ++ ++K   +SED + D    +QK+TD Y++K + I  Q
Sbjct:    8 ELKQNMEKGLQALEKSFNKVRTGRASISLLDGIKADYYGTPTPLNQVATLSVPESRQILISPWDTSALNAIEKAIQKSDLGLVPNNDGKVIRISIPPLTEARRKELVKVVRKMAEECKVKLRNARRDANEEFKSMKKNNDISEDQMHDYQDQVQKMTDSYIEKSEDILVQ 177          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_GEOSL (Ribosome-recycling factor OS=Geobacter sulfurreducens GN=frr PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.143e-41
Identity = 74/167 (44.31%), Postives = 124/167 (74.25%), Query Frame = -3
Query:  179 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 679
            D+K+ ME++++ +R  +  VRTGR+N  +LD+I V++YG+P  L  +A +  P+  ++ IQP++   +  IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+A+RNIRRDA+   +KL+K+KK+SED++K    ++Q +T+ Y+ K+D +
Sbjct:    8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITIQPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIAIRNIRRDAIDGLKKLEKDKKISEDDLKRAEKEVQDVTNVYVAKVDEV 174          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_STRPM (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M28 GN=frr PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.799e-41
Identity = 80/163 (49.08%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  185 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 673
            K R  ++   +   + S+R GR+N ++LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K+ID
Sbjct:   10 KERFAQSHQSLSREYASIRAGRANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAIKEID 172          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEPIN (Ribosome-recycling factor OS=Leptospira interrogans GN=frr PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 77/166 (46.39%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +   +QK+TD Y+ KI ++
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSVQDQIQKITDSYIDKISAL 173          
BLAST of CV712550 vs. ExPASy Swiss-Prot
Match: RRF_LEPIC (Ribosome-recycling factor OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=frr PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.655e-41
Identity = 77/166 (46.39%), Postives = 121/166 (72.89%), Query Frame = -3
Query:  179 VKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 676
            +K +M++TID+V+ +F ++RTGR+NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +   +QK+TD Y+ KI ++
Sbjct:   10 MKTKMDKTIDLVKKDFGTIRTGRANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSVQDQIQKITDSYIDKISAL 173          
The following BLAST results are available for this feature:
BLAST of CV712550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRU01.256e-4150.31Ribosome-recycling factor OS=Streptococcus uberis ... [more]
RRF_BREBN1.256e-4146.75Ribosome-recycling factor OS=Brevibacillus brevis ... [more]
RRF_STRTD1.641e-4149.70Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT21.641e-4149.70Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT11.641e-4149.70Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_SYNAS2.143e-4147.06Ribosome-recycling factor OS=Syntrophus aciditroph... [more]
RRF_GEOSL2.143e-4144.31Ribosome-recycling factor OS=Geobacter sulfurreduc... [more]
RRF_STRPM2.799e-4149.08Ribosome-recycling factor OS=Streptococcus pyogene... [more]
RRF_LEPIN3.655e-4146.39Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_LEPIC3.655e-4146.39Ribosome-recycling factor OS=Leptospira interrogan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I21_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712550 ID=CV712550; Name=CV712550; organism=Citrus sinensis; type=EST; length=846bp
CCCCCTTTTTTTCTAACAAAATATCCACCCGGTGTCTCCCATTAGTATCA
AAAAATGCCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGA
TTCACTAGAGAGCTCACCATTACATTTGTGTGTAAACAATCATTAAACCT
TCAACAACTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATA
TACTCATCTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTC
TTCAGAGAGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCAT
CTCTTCTTATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCC
ACAACCTTTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGT
TAACCGTATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGC
TTACTATGGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGA
ATCAATAGAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAA
ACTTACTGGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTG
GATTCGATCTTCCTGTCCTCACGGAATTGAAATTGGTTCGGACCATATCG
ATAGTCCTTTCCATCCTAGCTTTAACATCCTTCTCAATGGAAGATTTTTC
CGCTTCAATTTCTTCAATAGTTGCACACCTCACAACTCCATTTCTCTTGT
GTGCCAGTTGTCTTACAACGATAGGTTTGTTGGATAATTTCACAAGTCTA
GAGTAGTTTGCAGCTGAGCTCTACTGGCGCACACTAACGCTGCTAG
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