CV712547

Overview
NameCV712547
Unique NameCV712547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_LEPVR (Putative membrane protein ycf1 OS=Lepidium virginicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.794e-63
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 2
Query:   35 NQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 766
            N + EE ELAD+    SD +KQ+   S LSNQEK  +E Y  S  K R  KKQSK  TEV+LD FL R+   QLRW     F +KILN+++VYC L+RL NP+++AI+SI+RGEMSL IL+ +K F L +L K G+LIIEP RLSV+N+GQ  +Y+ +GI+LV KNK KI+KRY       KK  ++ I K+QK T NR KNHYD  VPE IL PKRRRE R LICFN K +N   +N  F  N
Sbjct: 1433 NLNNEEKELADEVELESDNEKQINPESALSNQEKTIQEIYAESKKKKRQNKKQSKSNTEVELDLFLTRHSRFQLRWN--CFFNQKILNNVKVYCLLIRLKNPNEIAISSIERGEMSLDILMIEKNFTLAKLMKKGILIIEPVRLSVQNNGQLIIYRTIGISLVQKNKHKISKRY-------KKKIEKSITKYQKKTVNRKKNHYDFFVPENILSPKRRREFRILICFNLKKKNASDRNSRFDKN 1667          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_TOBAC (Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 5.220e-63
Identity = 129/248 (52.02%), Postives = 171/248 (68.95%), Query Frame = 2
Query:   26 ELSNQSKEENELADQGTPR--SDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            ++ N+ +E  E A QG     SD + +  LG VLS  +   +++Y  SD K   KKKQ K  TE +LD FLKRYL  QLRW  A++  ++++ +++VYC L+RLINPS +AI+SIQR EMSL I++ +K   L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K +  +RY E+ YVDKK+FDEFI + Q    N +KNH+DLLVPE IL  +RRRELR    FNS N NG+ +N VF N
Sbjct: 1586 KIKNRIQEAKEPASQGEKERGSDIENKGNLGPVLSKHQNALKKDYAESDTKKGKKKKQYKSNTEAELDLFLKRYLLFQLRWNDALN--QRMIENIKVYCLLLRLINPSKIAISSIQRREMSLDIMLIQKNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYPEQRYVDKKNFDEFILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSLFNSLNWNGIDRNSVFCN 1831          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_NICSY (Putative membrane protein ycf1 OS=Nicotiana sylvestris GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 5.220e-63
Identity = 129/248 (52.02%), Postives = 171/248 (68.95%), Query Frame = 2
Query:   26 ELSNQSKEENELADQGTPR--SDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            ++ N+ +E  E A QG     SD + +  LG VLS  +   +++Y  SD K   KKKQ K  TE +LD FLKRYL  QLRW  A++  ++++ +++VYC L+RLINPS +AI+SIQR EMSL I++ +K   L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K +  +RY E+ YVDKK+FDEFI + Q    N +KNH+DLLVPE IL  +RRRELR    FNS N NG+ +N VF N
Sbjct: 1586 KIKNRIQEAKEPASQGEKERGSDIENKGNLGPVLSKHQNALKKDYAESDTKKGKKKKQYKSNTEAELDLFLKRYLLFQLRWNDALN--QRMIENIKVYCLLLRLINPSKIAISSIQRREMSLDIMLIQKNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYPEQRYVDKKNFDEFILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSLFNSLNWNGIDRNSVFCN 1831          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_PANGI (Putative membrane protein ycf1 OS=Panax ginseng GN=ycf1 PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.519e-62
Identity = 124/253 (49.01%), Postives = 181/253 (71.54%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRET--EVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            +K+ FEL N+++EE E AD+G   SDAQ Q     VLSNQ+KD EE+Y    +K    KKQSK ++  +V+L+  LK++L  QLR+   +  +++++N+++V C L+ L NP ++ ++SIQ  E+SL I++ +K   ++EL K G+LIIEP RLSVK DGQF +YQ +GI+L+HK+K +  +RY+E+ Y+DKK FDE   ++Q+ TGNR+KNHYD LVPE IL  +RRRELR LI FNS+++ G+  NPVF N
Sbjct: 1601 EKKIFELKNRNQEEKEPADRGDLGSDAQNQGNRRFVLSNQQKDIEEDYAKLVLKRGKTKKQSKNKSNVKVELNALLKQHLLFQLRYDEGL--KQRMINNLKVSCLLIGLKNPRNITVSSIQNREISLDIMLIRKSLTVRELMKRGVLIIEPIRLSVKKDGQFIMYQTIGISLIHKSKYQTNQRYREQRYIDKKKFDESTPRYQRRTGNRDKNHYDFLVPEKILSSRRRRELRILIHFNSRSRKGVDSNPVFCN 1851          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_ILLOL (Putative membrane protein ycf1 OS=Illicium oligandrum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.984e-62
Identity = 132/256 (51.56%), Postives = 174/256 (67.97%), Query Frame = 2
Query:    2 SPTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQ--SKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            S  QKE+ EL  Q++EE +  D+  P SDAQ Q           KD EE+ T SD K R KKK+  SK   E +LDFFLKRY   QLRW   ++  +K +N+++VYC L+RL++P ++A+ASIQRGEM L  +  +K  A+ EL K G+LI+EP RLS+K DGQF +YQ +GI+LVHK+K K  +R +EK YVD+  FD  I +H KM  NR+K +YDLLVPE IL  +RRRELR LI FNS+N+N + +NPVF N
Sbjct: 1570 SYNQKEHLELETQNQEEKKRQDKKNPGSDAQNQ-----------KDVEEDSTRSDSKKRSKKKKPKSKSNKEAELDFFLKRYFLFQLRWDDPLN--QKRINNIKVYCLLLRLMDPKEIALASIQRGEMCLAAMKIQKDLAVTELIKKGILILEPVRLSIKWDGQFIMYQTIGISLVHKSKHKTNRRCREKRYVDENYFDISIEQHGKMLVNRDKKNYDLLVPENILSLRRRRELRILIRFNSENRNIVNRNPVFLN 1812          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_DIOEL (Putative membrane protein ycf1 OS=Dioscorea elephantipes GN=ycf1 PE=3 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.844e-62
Identity = 124/257 (48.25%), Postives = 170/257 (66.15%), Query Frame = 2
Query:    2 SPTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 772
            S  QKEY E  N ++E+NE   QG  RSD +KQ         ++KD EEN+T S++K   KKKQSK   E +L FFLK+YL  QLRW    S  ++++++++VYC L+RLIN  ++ I+SIQRGEM L +++ +K  AL EL K G+LIIEP RL ++   +  +YQ +GI+L++KN+     +Y +K YVDKK FD +I ++  M  N +KNHYD  VPE IL P+RRRELR LICFNS N N + +NP F N  K
Sbjct: 1550 SSNQKEYLEFENSNQEKNEQQGQGDLRSDLRKQ---------KKKDVEENHTKSEIKKHKKKKQSKSNKEAELYFFLKKYLLFQLRWDD--SLNQRMIDNIKVYCLLLRLINTKEIVISSIQRGEMCLDVMLIQKDLALTELIKKGILIIEPIRLFLERGVKLIIYQTIGISLINKNQTN--GKYLKKRYVDKKSFDRYIGRYNNMLANGDKNHYDFFVPENILSPRRRRELRILICFNSCNWNVVDRNPAFCNENK 1793          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_ATRBE (Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.286e-61
Identity = 124/248 (50.00%), Postives = 172/248 (69.35%), Query Frame = 2
Query:   26 ELSNQSKEENELADQGTPR--SDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            ++ N+ +E  E A+QG     SD + +V  G VLS  + D E++Y  SD K   KKKQ K  TE +LD FLKRYL  QL+W   ++  ++++ +++VYC L+RLINP+ ++I+S+QRGEMSL I++ +    L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K +  +RY+++ YVDKK+FDE I + Q    N +KNH+DLLVPE IL  +RRRELR    FNS N NG+ +N VF N
Sbjct: 1565 KIKNRIQEAKEPANQGERERGSDIENKVNPGPVLSKHQNDLEKDYAESDTKKSKKKKQYKSNTEAELDLFLKRYLLFQLKWNDDLN--QRMIENIKVYCLLLRLINPTKISISSVQRGEMSLDIMLIQGNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYRDQRYVDKKNFDESILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCN 1810          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_CHLSC (Putative membrane protein ycf1 OS=Chloranthus spicatus GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.193e-61
Identity = 130/256 (50.78%), Postives = 173/256 (67.58%), Query Frame = 2
Query:    2 SPTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRI--KKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            S  QKEY +   Q+ EE EL  Q    SD +          NQ+K  EE+YTGSD+K R   KKK SK   EV+LDFFLKRYL  QLRW    S  ++I+N++++YC L+RLINP+++AI+SIQ+GEM L ++  +K  A  EL K G+ IIEP RLS+K DG F++YQ VGI+LVHK+K +I +RY+EK YVD+  F+   A+H K+  N ++NHYDLL PE I   +RR+E+R LI FNS N N + +NPVF N
Sbjct: 1569 SSNQKEYLD---QNHEEKELLGQEDCGSDPR----------NQQKYIEEDYTGSDIKKRRSRKKKLSKSNEEVELDFFLKRYLFFQLRWD--YSLDQRIINNIKIYCLLLRLINPNEIAISSIQKGEMFLDVMAIQKDLAFTELRKKGIFIIEPLRLSIKWDGPFYMYQTVGISLVHKSKHQINRRYREKRYVDQNHFNRSTAQHGKILVNGDENHYDLLFPEKIPSTRRRKEMRILISFNSGNGNVVNRNPVFLN 1809          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_ARAHI (Putative membrane protein ycf1 OS=Arabis hirsuta GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.741e-61
Identity = 128/244 (52.46%), Postives = 161/244 (65.98%), Query Frame = 2
Query:   35 NQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 766
            N +KEENEL  QG   SD +K+    S LSNQEK+ E+NY  S +K R  KKQ K  TE +L  FL RY   QLRW     F +KILN+++VYC LVRL NP+++AI+SI+RGE+SL IL+ +K F   +L K G+LIIEP RLSVKNDGQ  +Y+ VGI+LVHKNK+KI+KRY++K Y+DK                  KN+YD  +PE IL PKRRRE R LICFN K +N   +N  F  N
Sbjct: 1488 NLNKEENELVGQGELESDNEKKRNPESALSNQEKNIEKNYAESKIKKRQNKKQYKSHTEAELYLFLTRYSRFQLRWN--CFFNQKILNNIKVYCLLVRLKNPNEIAISSIERGELSLDILMIEKNFTFSKLMKKGILIIEPVRLSVKNDGQLIIYRTVGISLVHKNKQKISKRYKKKSYIDK------------------KNNYDFFIPENILSPKRRREFRILICFNLKKKNARDRNSRFDKN 1711          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_COFAR (Putative membrane protein ycf1 OS=Coffea arabica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 6.381e-61
Identity = 129/254 (50.79%), Postives = 169/254 (66.54%), Query Frame = 2
Query:    5 PTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSV---LSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVF 757
            P+ K+    +   KE+   ADQ   RSDAQKQ  LGSV    + QEKD EE+Y  S +K   KKKQ K +TE +LDFFLKRYL  QLRW  A++  ++++N++++YC L+RLINP  + I+SIQR EMSL I++ +K  +L EL K G+L+IEP RLSVKNDGQF +YQI+GI++VHKNK +  + Y+E+ YVD                   KN +DLLVPE IL  + RRELR LICF SKN+N + KN VF
Sbjct: 1573 PSNKQIKNKNQNQKEKETPADQEDLRSDAQKQGNLGSVPPTKTKQEKDNEEDYAVSKIKAGKKKKQYKSKTEAELDFFLKRYLVFQLRWGDALN--QRMINNVKIYCLLLRLINPRKITISSIQRREMSLDIMLIQKNLSLTELIKRGVLVIEPDRLSVKNDGQFIMYQILGISVVHKNKHQTNQGYREQTYVD-------------------KNRFDLLVPENILSTRCRRELRILICFTSKNRNSVDKNSVF 1805          
The following BLAST results are available for this feature:
BLAST of CV712547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_LEPVR1.794e-6354.10Putative membrane protein ycf1 OS=Lepidium virgini... [more]
YCF1_TOBAC5.220e-6352.02Putative membrane protein ycf1 OS=Nicotiana tabacu... [more]
YCF1_NICSY5.220e-6352.02Putative membrane protein ycf1 OS=Nicotiana sylves... [more]
YCF1_PANGI1.519e-6249.01Putative membrane protein ycf1 OS=Panax ginseng GN... [more]
YCF1_ILLOL1.984e-6251.56Putative membrane protein ycf1 OS=Illicium oligand... [more]
YCF1_DIOEL9.844e-6248.25Putative membrane protein ycf1 OS=Dioscorea elepha... [more]
YCF1_ATRBE1.286e-6150.00Putative membrane protein ycf1 OS=Atropa belladonn... [more]
YCF1_CHLSC2.193e-6150.78Putative membrane protein ycf1 OS=Chloranthus spic... [more]
YCF1_ARAHI3.741e-6152.46Putative membrane protein ycf1 OS=Arabis hirsuta G... [more]
YCF1_COFAR6.381e-6150.79Putative membrane protein ycf1 OS=Coffea arabica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712547 ID=CV712547; Name=CV712547; organism=Citrus sinensis; type=EST; length=791bp
ATCACCTACTCAAAAAGAATATTTTGAATTATCGAATCAAAGTAAAGAAG
AAAACGAACTCGCAGACCAAGGAACTCCGAGATCGGATGCACAAAAGCAA
GTAATTCTTGGATCAGTTCTCTCAAACCAAGAAAAAGATGGTGAAGAAAA
TTATACGGGATCGGACATGAAAACCCGTATAAAGAAAAAGCAATCCAAAA
GAGAAACCGAAGTACAGCTCGATTTCTTCCTAAAAAGATATTTGTGTTTG
CAGTTGCGATGGAGGGGGGCTGTTTCTTTCAGAGAAAAAATACTCAATGA
TATGCAAGTATATTGTCACCTGGTTCGACTAATAAATCCTAGCGACGTTG
CTATAGCCTCTATTCAAAGGGGAGAAATGAGTCTGCCTATTTTGATCACT
AAGAAGAAGTTCGCTCTTAAAGAATTGACGAAAGGGGGAATGCTTATTAT
CGAACCCCGTCGTTTGTCTGTAAAAAATGATGGACAATTTTTTCTATATC
AAATCGTAGGTATTGCATTGGTTCATAAGAATAAGCGCAAAATTACTAAA
AGATACCAAGAAAAGGGCTATGTTGATAAAAAAGATTTTGATGAATTCAT
TGCAAAACATCAAAAAATGACTGGAAATAGAAACAAAAATCATTATGATT
TGCTTGTTCCTGAAACTATTTTACTCCCTAAACGTCGTAGAGAATTAAGA
ACCCTAATTTGTTTCAATTCGAAGAATCAAAATGGTATGCAGAAAAATCC
AGTATTTTTTAATAACGGAAAGGGCGGCGGCCGCGTTTTGG
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