CV712547

Overview
NameCV712547
Unique NameCV712547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.800e-59
Identity = 121/246 (49.19%), Postives = 164/246 (66.67%), Query Frame = 2
Query:   26 ELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            ++ N+S+E  E   Q    SD + +  L  V S  + D E++Y  SD K    KKQ K  TE +LD FLKRYL  QLRW  A++  +++L +++VYC L+RLINP+ + I+SIQR EMSL I++ +    L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K +  +RY+E+ YVDKK+FDEFI + Q    N  K H+DLLVPE IL  +RRRELR    FNS N N + +N VF N
Sbjct: 1574 KIKNRSQETKEPPSQRERGSDIENKGNLSPVFSKHQTDLEKDYVESDTKKGQNKKQYKSNTEAELDLFLKRYLLFQLRWNDALN--QRMLENIKVYCLLLRLINPTKITISSIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCN 1817          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.019e-58
Identity = 121/246 (49.19%), Postives = 164/246 (66.67%), Query Frame = 2
Query:   26 ELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            ++ N+S+E  E   Q    SD + +  L  V S  + D E++Y  SD K    KKQ K  TE +LD FLKRYL  QLRW  A++  +++L +++VYC L+RLINP+ + I+SIQR EMSL I++ +    L +L K G+LIIEP RLSVK++GQF +YQ +GI+LVHK+K +  +RY+E+ YVDKK+FDEFI + Q    N  K H+DLLVPE IL  +RRRELR    FNS N N + +N VF N
Sbjct: 1574 KIKNRSQETKEPPSQRERGSDIENKGNLSPVFSKHQTDLEKDYVESDTKKGQNKKQYKSNTEAELDLFLKRYLLFQLRWNDALN--KRMLENIKVYCLLLRLINPTKITISSIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKHNGQFIMYQTIGISLVHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFDLLVPENILWSRRRRELRIRSFFNSLNWNVVDRNSVFCN 1817          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_SOLLC (Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.269e-58
Identity = 121/253 (47.83%), Postives = 167/253 (66.01%), Query Frame = 2
Query:    5 PTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            P+ K+  ++ N+S+E  E   Q    SD + +  L  V S  + D E++Y  SD K    KKQ K  TE +LD FLKRYL  QLRW GA++  +++  +++VYC L+RLINP+ + I+SIQR EMSL I++ +    L +L K G+LIIEP RLSVK++GQF +YQ +GI+L+HK+K +  +RY+E+ YVDKK+FDEFI + Q    N  K H+ LLVPE IL  +RRRELR    FNS N N + +N VF N
Sbjct: 1572 PSNKK-IKIKNRSQEAKEPPSQRERGSDIENKGNLSPVFSKHQTDLEKDYVESDTKKGKNKKQYKSNTEAELDLFLKRYLLFQLRWNGALN--QRMFENIKVYCLLLRLINPTKITISSIQRREMSLDIMLIQANLPLTDLMKKGVLIIEPIRLSVKDNGQFIMYQTIGISLIHKSKHQTNQRYREQRYVDKKNFDEFILQPQTQRINTEKTHFGLLVPENILWSRRRRELRIRSFFNSWNWNVVDRNSVFCN 1821          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_ACOCL (Putative membrane protein ycf1 OS=Acorus calamus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.126e-57
Identity = 118/252 (46.83%), Postives = 172/252 (68.25%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 766
            QK++ E+ NQ KE+    D   P    Q+  I+     NQ+KD EE+  GS +K R KKK+ K + E +LDFFLK+YL  QLRW   ++  +K++ +++VYC L+RL N  ++AI+SI+RGEM L +++ +K  +L+EL K G+ IIEP RLS K DG+  +YQ +GI+LV +NK  I  R ++KGY D+  F++ + + +KM  +R++N YDLLVPE IL P+RRRELR LICFNS N++ +  N VF+NN
Sbjct: 1595 QKKHLEVENQEKEDFRQVDL-RPNPTNQRDPIVSDT-RNQQKDIEEDSVGSGVKKRRKKKKFKSKKEAELDFFLKKYLLFQLRWDELLN--KKMMTNIKVYCLLLRLKNLKEIAISSIERGEMCLDLMLMQKDLSLRELIKKGIFIIEPIRLSRKWDGKLIMYQTIGISLVAENKDPINIRCRKKGYADENSFNKSVRQQEKMLVDRDENDYDLLVPENILSPRRRRELRILICFNSGNESAVDGNSVFYNN 1842          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_ACOAM (Putative membrane protein ycf1 OS=Acorus americanus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.126e-57
Identity = 118/252 (46.83%), Postives = 172/252 (68.25%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 766
            QK++ E+ NQ KE+    D   P    Q+  I+     NQ+KD EE+  GS +K R KKK+ K + E +LDFFLK+YL  QLRW   ++  +K++ +++VYC L+RL N  ++AI+SI+RGEM L +++ +K  +L+EL K G+ IIEP RLS K DG+  +YQ +GI+LV +NK  I  R ++KGY D+  F++ + + +KM  +R++N YDLLVPE IL P+RRRELR LICFNS N++ +  N VF+NN
Sbjct: 1595 QKKHLEVENQEKEDFRQVDL-RPNPTNQRDPIVSDT-RNQQKDIEEDSVGSGVKKRRKKKKFKSKKEAELDFFLKKYLLFQLRWDELLN--KKMMTNIKVYCLLLRLKNLKEIAISSIERGEMCLDLMLMQKDLSLRELIKKGIFIIEPIRLSRKWDGKLIMYQTIGISLVAENKDPINIRCRKKGYADENSFNKSVRQQEKMLVDRDENDYDLLVPENILSPRRRRELRILICFNSGNESAVDGNSVFYNN 1842          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_NANDO (Putative membrane protein ycf1 OS=Nandina domestica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.509e-57
Identity = 131/256 (51.17%), Postives = 166/256 (64.84%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEEN----YTG-SDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 763
            QK+  EL N  KEE +   Q    SD QKQ   GS  S Q+KD ++N    Y G SD++ R KKKQS      +LD FLKRY   QLRW   ++  +KI+N+++VYC L+RL NP ++AIASIQR EMSL ++   K   L +L   GMLIIEP RLS+K DGQF LYQ + I+ VHKNK +  +RYQEK  VDK   ++ IA+H+K+ GNR+KN   LLV E IL  +RRRELR  IC NS N N + +NPVF N
Sbjct: 1524 QKKSLELKN--KEEKKKPAQENIGSDTQKQGNPGSDPSTQQKDIKKNVKEDYDGRSDIQKRKKKKQSTGNIAAELDLFLKRYFLFQLRWDNPLN--KKIINNVKVYCLLLRLKNPKEIAIASIQRDEMSLDVMPISKTLTLAKLINKGMLIIEPARLSIKRDGQFLLYQTITISRVHKNKHQTNQRYQEKRNVDKNGLEKSIARHEKLVGNRDKN--PLLVLENILSSQRRRELRIRICLNSGNVNVVDRNPVFCN 1773          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_DRANE (Putative membrane protein ycf1 OS=Draba nemorosa GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.245e-56
Identity = 127/263 (48.29%), Postives = 163/263 (61.98%), Query Frame = 2
Query:    2 SPTQKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVL 790
            S  +K      N +KEEN LA QG   SD +KQ    SVL NQEK+ +ENY  S +K R  KKQ K  TE +L+ FL RY   QLRW   ++  +KI+N+++VYC LVRL NP+++ I+ I+RGE+SL IL+ +K F   +L K GMLI+EP RLSVKNDGQ  +Y+ +GI+LVHKNK KI+KRY+    +DK                  KN+YD  +PE IL PKRRRE R LICFN K +N   +N  F  N K    VL
Sbjct: 1482 SSNEKGSLWFYNLNKEENGLAGQGELESDNEKQRNPESVLLNQEKNIDENYAESKIKKRQNKKQYKSNTEAELELFLTRYSRFQLRWNCFLN--QKIINNIKVYCLLVRLKNPNEITISCIERGELSLDILMIEKNFTFTKLMKKGMLIVEPVRLSVKNDGQLIIYRTIGISLVHKNKPKISKRYKN---IDK------------------KNNYDCFIPENILSPKRRREFRILICFNLKKKNARDRNSRFDKNIKNLTTVL 1721          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_LEMMI (Putative membrane protein ycf1 OS=Lemna minor GN=ycf1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.623e-56
Identity = 122/260 (46.92%), Postives = 177/260 (68.08%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELA----DQGTP-RSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKR--KITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQN--GMQKNPVFFN 763
            +KEY EL NQ+++E +      D G+  + D QKQ         +++DGE+NYT S +K R KKKQ K + E +LDFFLK+Y   QLRW    S  ++++N+++VYC L+RLIN  ++AI+SIQRGEM L +++ +K  +L EL K G+ IIEP RLS+K D +FF+YQ +GI+LV+K+K+  +  +RY +K Y+D+  FD+ I++H  M  + +KN+YDL VPE IL  +RRRELR LICFNS   N   + +N +FFN
Sbjct: 1591 KKEYLELENQNQQEKKQKLSQRDLGSDTQQDTQKQ--------KKKEDGEKNYTESTIKKRRKKKQFKSKKEAELDFFLKKYFLFQLRWDD--SLNQRMINNIKVYCLLLRLINLKEIAISSIQRGEMRLDVMLIQKDLSLTELIKRGIFIIEPVRLSIKWDEEFFIYQTLGISLVNKSKQQSETDRRYIQK-YLDENPFDKSISRHSTMLVSEDKNYYDLFVPENILSTRRRRELRILICFNSWKGNVVDVDRNFIFFN 1839          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_NUPAD (Putative membrane protein ycf1 OS=Nuphar advena GN=ycf1 PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.072e-56
Identity = 116/254 (45.67%), Postives = 162/254 (63.78%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 772
            QKEY EL N++++E E   QG   SD +          NQ+KD   N TGSD+K R KKK+ K + E +LD  LK+Y   QLRW    SF +++ N+++VYC L+RL++PS++AI+SI+RGEM L +++  K  +L EL K G+ IIEP RLS K DG   +YQ + I+L HK + +  + YQ K ++D+  F+  IA H  +  N + N+YDLLVPE IL P  RRE R +  FN +N+N + KNPVFFN  K
Sbjct: 1558 QKEYLELENRNRDEKERQHQGNLISDTR----------NQKKDVGANSTGSDIKKRRKKKKFKSKKEAELDLLLKKYFLFQLRWGD--SFNQRMTNNIKVYCLLLRLMDPSEIAISSIERGEMGLDVMLIHKDLSLPELIKRGIFIIEPVRLSTKWDGISIMYQTIAISLTHKVQHQTNRGYQAKKHIDENYFNGSIACHGGVRVNGDNNNYDLLVPENILSPNHRREFRIISRFNYRNRNVVNKNPVFFNRAK 1799          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_NYMAL (Putative membrane protein ycf1 OS=Nymphaea alba GN=ycf1 PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.924e-55
Identity = 115/254 (45.28%), Postives = 161/254 (63.39%), Query Frame = 2
Query:   11 QKEYFELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 772
            QK Y EL N++++E E   QG   SD          + N++KD   N  GSD+K R KKK+ K + E +LD FLK+Y   QLRW     F + + N+++VYC L+RL+NP+++AI+SIQ GEM L +++  + F+L EL K G+ +IEP RLS+K DG   +YQ + I+L HK + +  + YQ K Y+DK  F+  IA+H  +  N + N+YDLLVPE IL P  RRELR L  FN +N+N + KNPVF N  K
Sbjct: 1647 QKGYLELENRNRDEKERQHQGNLISD----------IRNKKKDVGANSAGSDIKKRRKKKKFKSKKEAELDLFLKKYFIFQLRWDDP--FNKGMNNNIKVYCLLLRLMNPNEIAISSIQSGEMGLDVMLINRGFSLPELIKKGIFLIEPVRLSIKRDGISIMYQTIAISLTHKIQHQTNQGYQLKKYIDKNYFNGSIARHGGVRVNGDNNNYDLLVPEHILSPSHRRELRILSRFNYRNRNLVNKNPVFCNRAK 1888          
The following BLAST results are available for this feature:
BLAST of CV712547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_SOLBU7.800e-5949.19Putative membrane protein ycf1 OS=Solanum bulbocas... [more]
YCF1_SOLTU1.019e-5849.19Putative membrane protein ycf1 OS=Solanum tuberosu... [more]
YCF1_SOLLC2.269e-5847.83Putative membrane protein ycf1 OS=Solanum lycopers... [more]
YCF1_ACOCL1.126e-5746.83Putative membrane protein ycf1 OS=Acorus calamus G... [more]
YCF1_ACOAM1.126e-5746.83Putative membrane protein ycf1 OS=Acorus americanu... [more]
YCF1_NANDO2.509e-5751.17Putative membrane protein ycf1 OS=Nandina domestic... [more]
YCF1_DRANE1.245e-5648.29Putative membrane protein ycf1 OS=Draba nemorosa G... [more]
YCF1_LEMMI3.623e-5646.92Putative membrane protein ycf1 OS=Lemna minor GN=y... [more]
YCF1_NUPAD8.072e-5645.67Putative membrane protein ycf1 OS=Nuphar advena GN... [more]
YCF1_NYMAL8.924e-5545.28Putative membrane protein ycf1 OS=Nymphaea alba GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712547 ID=CV712547; Name=CV712547; organism=Citrus sinensis; type=EST; length=791bp
ATCACCTACTCAAAAAGAATATTTTGAATTATCGAATCAAAGTAAAGAAG
AAAACGAACTCGCAGACCAAGGAACTCCGAGATCGGATGCACAAAAGCAA
GTAATTCTTGGATCAGTTCTCTCAAACCAAGAAAAAGATGGTGAAGAAAA
TTATACGGGATCGGACATGAAAACCCGTATAAAGAAAAAGCAATCCAAAA
GAGAAACCGAAGTACAGCTCGATTTCTTCCTAAAAAGATATTTGTGTTTG
CAGTTGCGATGGAGGGGGGCTGTTTCTTTCAGAGAAAAAATACTCAATGA
TATGCAAGTATATTGTCACCTGGTTCGACTAATAAATCCTAGCGACGTTG
CTATAGCCTCTATTCAAAGGGGAGAAATGAGTCTGCCTATTTTGATCACT
AAGAAGAAGTTCGCTCTTAAAGAATTGACGAAAGGGGGAATGCTTATTAT
CGAACCCCGTCGTTTGTCTGTAAAAAATGATGGACAATTTTTTCTATATC
AAATCGTAGGTATTGCATTGGTTCATAAGAATAAGCGCAAAATTACTAAA
AGATACCAAGAAAAGGGCTATGTTGATAAAAAAGATTTTGATGAATTCAT
TGCAAAACATCAAAAAATGACTGGAAATAGAAACAAAAATCATTATGATT
TGCTTGTTCCTGAAACTATTTTACTCCCTAAACGTCGTAGAGAATTAAGA
ACCCTAATTTGTTTCAATTCGAAGAATCAAAATGGTATGCAGAAAAATCC
AGTATTTTTTAATAACGGAAAGGGCGGCGGCCGCGTTTTGG
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