CV712547

Overview
NameCV712547
Unique NameCV712547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_CUSOB (Putative membrane protein ycf1 OS=Cuscuta obtusiflora GN=ycf1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.645e-16
Identity = 66/256 (25.78%), Postives = 122/256 (47.66%), Query Frame = 2
Query:   41 SKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPI----------LITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQ 730
            +K  ++  +Q T + + + +    + + N+E    EN   ++ K + K K   +  +ETE Q             +  F+K++L  QLR  G   F++    ++Q+ C L+RL+N +++  +SIQR +++L I          L   ++  + E  K   +  EP  L +  +G+F +YQ++ ++LVHK K       + +G +  +  +  +A H               +PE IL  +RRRELR L+C N K +
Sbjct: 1367 NKLSSQQQNQTTTKINTETKNQQKNRVENEENKETENQQNAETKNKQKSKTENEENKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQREKLNLHIMPEIGIKDLTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLIYQLLNMSLVHKIKYPTNNESRNQGVITTQKNNN-VASH---------------IPENILSSRRRRELRILMCLNKKKK 1604          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_CUSGR (Putative membrane protein ycf1 OS=Cuscuta gronovii GN=ycf1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 69/256 (26.95%), Postives = 121/256 (47.27%), Query Frame = 2
Query:   41 SKEENELADQ-GTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKK---QSKRETEVQ-------------LDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELT-------------KGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFN 718
            SK++N+   +  T   + QK     S + N++    EN   ++ K + K K   +  +ETE Q             +  F+K++L  QLR  G   F++    ++Q+ C L+RL+N +++  +SIQR +++L I+    +  +KELT             K   +  EP  L +  +G+F +YQ++ ++LVH  K       + +G +  +       K+  M  +         +PE IL  +RRRELR L+C N
Sbjct: 1368 SKQQNQTTTKMNTETKNKQK-----SKVENEKNKKTENQQNAETKNKQKSKTENEGNKETENQQNDESEDDPQLAYIRSFMKKHLLFQLR--GESIFKKSGFKNIQILCLLLRLMNQNEMLFSSIQRQKLNLHIM---PEIGIKELTLEVLEEIGVPEFLKEKRVNFEPFPLYINKNGKFLMYQLLNMSLVHNIKYPTNNESRNQGVITTQ-------KNNNMASH---------IPENILSSRRRRELRILMCLN 1597          
BLAST of CV712547 vs. ExPASy Swiss-Prot
Match: YCF1_OENEH (Putative membrane protein ycf1 OS=Oenothera elata subsp. hookeri GN=ycf1 PE=3 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 2
Query:  353 IASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKN-DGQFFLYQIVGIALV-------HKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNS---KNQNGMQKNPVFFNNGKGGGRVL 790
            ++SI+R  + +         A   LT G +  IEP R+S +N D  F +YQ++ I+LV       H +  ++T++Y+ +     ++F  F+ K    T   +K+  DL VPETIL  KRRRELR LI F S   K +N + KNPVF+   K  G V+
Sbjct: 2263 LSSIKRERLKMEFSTRNNSLATIMLTHG-IFSIEPLRISRQNQDASFLIYQLIKISLVEQLDPYDHNDSFELTEKYRAR-----RNF--FMPKTNAET--MHKSDSDLFVPETILSTKRRRELRILISFYSRRGKRKNRIYKNPVFWKYVKNCGEVV 2409          
The following BLAST results are available for this feature:
BLAST of CV712547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_CUSOB1.645e-1625.78Putative membrane protein ycf1 OS=Cuscuta obtusifl... [more]
YCF1_CUSGR1.819e-1526.95Putative membrane protein ycf1 OS=Cuscuta gronovii... [more]
YCF1_OENEH1.883e-1236.31Putative membrane protein ycf1 OS=Oenothera elata ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712547 ID=CV712547; Name=CV712547; organism=Citrus sinensis; type=EST; length=791bp
ATCACCTACTCAAAAAGAATATTTTGAATTATCGAATCAAAGTAAAGAAG
AAAACGAACTCGCAGACCAAGGAACTCCGAGATCGGATGCACAAAAGCAA
GTAATTCTTGGATCAGTTCTCTCAAACCAAGAAAAAGATGGTGAAGAAAA
TTATACGGGATCGGACATGAAAACCCGTATAAAGAAAAAGCAATCCAAAA
GAGAAACCGAAGTACAGCTCGATTTCTTCCTAAAAAGATATTTGTGTTTG
CAGTTGCGATGGAGGGGGGCTGTTTCTTTCAGAGAAAAAATACTCAATGA
TATGCAAGTATATTGTCACCTGGTTCGACTAATAAATCCTAGCGACGTTG
CTATAGCCTCTATTCAAAGGGGAGAAATGAGTCTGCCTATTTTGATCACT
AAGAAGAAGTTCGCTCTTAAAGAATTGACGAAAGGGGGAATGCTTATTAT
CGAACCCCGTCGTTTGTCTGTAAAAAATGATGGACAATTTTTTCTATATC
AAATCGTAGGTATTGCATTGGTTCATAAGAATAAGCGCAAAATTACTAAA
AGATACCAAGAAAAGGGCTATGTTGATAAAAAAGATTTTGATGAATTCAT
TGCAAAACATCAAAAAATGACTGGAAATAGAAACAAAAATCATTATGATT
TGCTTGTTCCTGAAACTATTTTACTCCCTAAACGTCGTAGAGAATTAAGA
ACCCTAATTTGTTTCAATTCGAAGAATCAAAATGGTATGCAGAAAAATCC
AGTATTTTTTAATAACGGAAAGGGCGGCGGCCGCGTTTTGG
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