CV712546

Overview
NameCV712546
Unique NameCV712546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_DRIGR (Putative membrane protein ycf1 OS=Drimys granadensis GN=ycf1 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.274e-67
Identity = 131/254 (51.57%), Postives = 178/254 (70.08%), Query Frame = -2
Query:   52 SPTQKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 813
            S  QKEY EL N++KE+ E   QG  RSDA+ Q  L S   N++K  E++Y  SD+K R KK++ K   E +L+FFLKRYL  QLRW    S  ++++N+++VYC L+RLINP ++AI+SIQRGEM L +++  K   L EL K G+ IIEP RLS+K DGQF +YQ +GI+L+HK+K +  +  +EK YVD+  FD  IA+H KM  N ++NHYDLL+ E IL P+RRR LR L+CFNS N+N +  NP+FFN
Sbjct: 1537 SSNQKEYLELENRNKEK-EQPGQGDIRSDARNQENLESDAQNKKKYVEKDYAESDIKKRRKKRKYKSNKEAELEFFLKRYLLFQLRWDD--SLNQRMINNIKVYCLLLRLINPREIAISSIQRGEMRLDVMLIHKDLTLTELIKRGIFIIEPARLSIKRDGQFIMYQTIGISLIHKSKHQTNRECREKKYVDENSFDGSIAQHGKMLVNGDENHYDLLISENILSPRRRRNLRILMCFNSSNENIVDINPIFFN 1787          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_POPAL (Putative membrane protein ycf1 OS=Populus alba GN=ycf1 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.663e-67
Identity = 134/261 (51.34%), Postives = 178/261 (68.20%), Query Frame = -2
Query:   13 YSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVWIKTK 795
            +  +S+   +  +L +Q     +++ QV L SVL NQEKD EE+Y  SD K R KKKQ K  TE +LDF LKRYLC QLRW    S  EKI+N++++YC L+RL NP ++ I+SIQRGE+SL IL+ +K   L EL K G+LIIE  RLSVKNDG+F +YQ + I LVHK K++I +RY++K Y+DKK+F E I  +Q +T N++KN+YDLLVPE +L  K RRELR LI FNSKN N +    +  NN K    +  K+K
Sbjct: 1507 FISISSNETKSIQLKNQNHEEKESEDQVDLESVLVNQEKDVEEDYVRSDRKERRKKKQYKSNTEAELDFLLKRYLCFQLRWDD--SLNEKIINNIKIYCLLLRLTNPREIIISSIQRGELSLDILMIQKDLTLTELMKKGILIIESTRLSVKNDGKFIMYQTINILLVHKRKQQINQRYRKKNYIDKKNFTESIVINQSLTRNKDKNNYDLLVPENLLSSKHRRELRILISFNSKNGNDINTEIINNNNIKNHAHIIDKSK 1765          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_POPTR (Putative membrane protein ycf1 OS=Populus trichocarpa GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.402e-66
Identity = 132/261 (50.57%), Postives = 177/261 (67.82%), Query Frame = -2
Query:   13 YSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVWIKTK 795
            +  +S+   +  +L +Q     +++ QV L SVL NQEKD EE+Y  SD K R KKKQ K  TE +LDF LKRYLC QLRW    S  +KI+N++++YC L+RL NP ++ I+SIQRGE+SL IL+ +K   L EL K G+LIIE  RLSVKNDG+F +YQ + I LVHK K++I +RY++K Y+DKK+F+E I  +Q +T N++KN+YDL VPE +L  K RRELR LI FNSKN N +    +  NN K    +  K K
Sbjct: 1509 FISISSNETKSIQLKNQNHEEKESEDQVDLESVLVNQEKDVEEDYVRSDRKERRKKKQYKSNTEAELDFLLKRYLCFQLRWDD--SLNQKIINNIKIYCLLLRLTNPREIIISSIQRGELSLDILMIQKDLTLTELMKKGILIIESTRLSVKNDGKFIMYQTINILLVHKRKQQINQRYRKKNYIDKKNFNESIVINQSLTRNKDKNNYDLPVPENLLSSKHRRELRILISFNSKNGNDINTEIINNNNIKNHAHIIDKRK 1767          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_OLIPU (Putative membrane protein ycf1 OS=Olimarabidopsis pumila GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.137e-66
Identity = 134/252 (53.17%), Postives = 171/252 (67.86%), Query Frame = -2
Query:   49 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 804
            +K+     N +KEE E A Q    SD +K+    S L NQEK+ EENY  S +K R  KKQ K  +E +LD FL RY   QLRW     F +KILN+++VYC LVRL NP+++AI+SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK KI+KRY++K Y+DKK  ++ I K+QK T NR KN+YD  VPE IL PKRRRE R LICFN K +    +N  F  N
Sbjct: 1478 EKKSLRFYNLTKEEKESAGQVELESDKEKKRNPESALLNQEKNIEENYAESTIKKRKNKKQYKSNSEAELDLFLTRYSRFQLRWN--CFFNQKILNNVKVYCLLVRLKNPNEIAISSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPIRLSVQNDGQLIIYRTIGISLVHKNKHKISKRYKKKSYIDKKKIEKSITKYQKKTVNRKKNNYDFFVPENILSPKRRREFRILICFNLKKKTVRDRNSRFDKN 1727          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CRUWA (Putative membrane protein ycf1 OS=Crucihimalaya wallichii GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.727e-65
Identity = 133/254 (52.36%), Postives = 170/254 (66.93%), Query Frame = -2
Query:   49 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKR--KITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 804
            +K+     N +K+E E   Q    SD ++Q    S LSNQEK+ EENY  S +K R  KKQ K  TE +LD FL RY   QLRW     F +KIL++++VYC LVRL NP+++AI+SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK   KI+KRY++K Y+DKK  D+ I K+Q  T NR KN+YD  VPE IL PKRRRE R LICFN K +    +N  F  N
Sbjct: 1477 EKKSRRFYNLNKDEKESTGQVEFESDKEQQRNSESALSNQEKNIEENYAESTIKKRKNKKQYKSNTEAELDLFLTRYSRFQLRWN--CFFNQKILDNVKVYCLLVRLKNPNEIAISSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGISLVHKNKNKDKISKRYKKKSYIDKKKIDKSITKYQNKTVNRKKNNYDFFVPENILSPKRRREFRILICFNFKKKTARDRNSRFDKN 1728          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_LIRTU (Putative membrane protein ycf1 OS=Liriodendron tulipifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.009e-64
Identity = 130/254 (51.18%), Postives = 177/254 (69.69%), Query Frame = -2
Query:   52 SPTQKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 813
            S  QKEY EL N+++EE E   QG           LGS   N++KD E++Y  SD+K R KK+QSK   E +L+FFLKRYL  QLRW   ++  ++++N+++VYC L+RLINP ++AI+SIQRGEM L +++ +K   L EL K G+LIIEP RLS+K DGQ+ +YQ +GI+LVHKNK +  +  +EK YVD+  FD  IA+H K+  N ++N+Y LLVPE I  P+RRRELR LIC NS+N N + +N VFFN
Sbjct: 1524 SSNQKEYLELENRNQEEKEQLGQGN----------LGSDPRNRQKDLEKDYAESDIKKRRKKRQSKSNKEAELNFFLKRYLLFQLRWDDPLN--QRMINNIKVYCLLLRLINPKEIAISSIQRGEMRLDVMLIQKDLTLTELIKRGILIIEPVRLSIKWDGQWIMYQTIGISLVHKNKYQTNRICREKKYVDENSFDRSIAQHGKVLVNGDENNYALLVPENIPSPRRRRELRILICLNSENGNVVDRNSVFFN 1765          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_ARATH (Putative membrane protein ycf1 OS=Arabidopsis thaliana GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.248e-64
Identity = 130/252 (51.59%), Postives = 169/252 (67.06%), Query Frame = -2
Query:   49 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 804
            +KE     N +KEE E A Q    SD + +    +   NQEK+ EEN+  S +K R  KKQ K  TE +LD FL RY   QLRW     F +KILN+++VYC LVRL NP+++A++SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK KI+KRY++K Y++KK F++ I K+Q  T N+ KN+YD  VPE IL PKRRRE R LICFN K +N    N  F  N
Sbjct: 1468 EKESLRFYNLNKEEKESAGQVELESDKETKRNPEAARLNQEKNIEENFAESTIKKRKNKKQYKSNTEAELDLFLTRYSRFQLRWN--CFFNQKILNNVKVYCLLVRLNNPNEIAVSSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGISLVHKNKHKISKRYKKKSYINKKFFEKSITKYQNKTVNKKKNNYDFFVPEKILSPKRRREFRILICFNLKKKNARDTNSRFDKN 1717          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CAPBU (Putative membrane protein ycf1 OS=Capsella bursa-pastoris GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.936e-64
Identity = 132/252 (52.38%), Postives = 167/252 (66.27%), Query Frame = -2
Query:   49 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 804
            +K+     N +KEE E A Q    SD +K+    S L NQEK+ EEN+  S +K R  KKQ K  TE +LD FL RY   QLRW     F +KILN+++VYC LVRL NP+++AI+SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI LVHKNK KI+KR ++K Y+DKK F++   K+Q  T NR K HYD  VPE IL PKRRRE R LICFN K +    +N  F  N
Sbjct: 1473 EKKSLRFYNLNKEEKESAGQFELESDKEKKRNPESALLNQEKNIEENFAESMIKKRQNKKQYKSNTEAELDLFLTRYSRFQLRWN--CFFNQKILNNVKVYCLLVRLNNPNEIAISSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGIPLVHKNKHKISKRSKKKSYIDKKIFEKSKTKYQNKTVNRKKKHYDFFVPENILSPKRRREFRILICFNLKKKTARDRNSRFDKN 1722          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.835e-64
Identity = 131/248 (52.82%), Postives = 173/248 (69.76%), Query Frame = -2
Query:   52 ELSNQSKEENELADQGTPR--SDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 789
            ++ N+ +EE E A QG     SD + +  LG VLS  +   +++YT SD K   KKKQ K  TE +LD FLKRYL  QLRW  A++  ++++ +++VYC L+RLINPS +AI+SIQR EMSL I++ +K   L EL K G+LIIEP RLSVKN+GQF +YQ +GI+LVHK+K +  +RY E+ YVDKK+FDEFI + Q    N +KNH+DLLVPE IL  +RRRELR    FNS N NG+ +N VF N
Sbjct: 1577 KIKNRIQEEKEPASQGEKERGSDIENKGNLGPVLSKHQNALKKDYTESDTKKGKKKKQYKSNTEAELDLFLKRYLLFQLRWNDALN--QRMIENIKVYCLLLRLINPSKIAISSIQRREMSLDIMLIQKNLTLTELMKKGILIIEPIRLSVKNNGQFIMYQTIGISLVHKSKHQTNQRYPEQRYVDKKNFDEFILQPQTQRINTDKNHFDLLVPENILWSRRRRELRIRSFFNSLNWNGVDRNSVFCN 1822          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_BARVE (Putative membrane protein ycf1 OS=Barbarea verna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.008e-64
Identity = 130/252 (51.59%), Postives = 168/252 (66.67%), Query Frame = -2
Query:   49 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 804
            +K+     N +KEE E A Q    SD + +    S L  QEK+ EENY  S +K R  KKQ K  TE +LD FL R+   QLRW     F +KILN+++VYC LVRL NP+++AI+SI+RGEMSL IL+ +K F   +L K G+LIIEP RLSV+NDGQ  +Y+ +GI+LVHKNK KI++RY++K Y DK+  ++ I K+Q  T NR KN+YD  VPE IL PKRRRE R LICFN K +N   +N  F  N
Sbjct: 1475 EKKSLRFYNLNKEEKESASQVELESDKENKKNPESALLKQEKNIEENYAESTIKKRKNKKQYKSNTEAELDLFLTRHSRFQLRWN--CFFNQKILNNVKVYCLLVRLKNPNEIAISSIERGEMSLDILMIEKNFTFAKLMKKGILIIEPVRLSVQNDGQLIIYRTIGISLVHKNKHKISQRYKKKSYSDKQKIEKSITKYQNKTVNRKKNNYDFFVPENILSPKRRREFRILICFNLKKKNARDRNSRFDKN 1724          
The following BLAST results are available for this feature:
BLAST of CV712546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_DRIGR1.274e-6751.57Putative membrane protein ycf1 OS=Drimys granadens... [more]
YCF1_POPAL1.663e-6751.34Putative membrane protein ycf1 OS=Populus alba GN=... [more]
YCF1_POPTR2.402e-6650.57Putative membrane protein ycf1 OS=Populus trichoca... [more]
YCF1_OLIPU3.137e-6653.17Putative membrane protein ycf1 OS=Olimarabidopsis ... [more]
YCF1_CRUWA7.727e-6552.36Putative membrane protein ycf1 OS=Crucihimalaya wa... [more]
YCF1_LIRTU1.009e-6451.18Putative membrane protein ycf1 OS=Liriodendron tul... [more]
YCF1_ARATH2.248e-6451.59Putative membrane protein ycf1 OS=Arabidopsis thal... [more]
YCF1_CAPBU2.936e-6452.38Putative membrane protein ycf1 OS=Capsella bursa-p... [more]
YCF1_NICTO3.835e-6452.82Putative membrane protein ycf1 OS=Nicotiana toment... [more]
YCF1_BARVE5.008e-6451.59Putative membrane protein ycf1 OS=Barbarea verna G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712546 ID=CV712546; Name=CV712546; organism=Citrus sinensis; type=EST; length=817bp
CCTCGAGCAGATTTTTGTTTTTATCCAAACGCGGCCGCCGCCCTTTCCGT
TATTAAAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTG
AAACAAATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGT
TTCAGGAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTT
TTTGATGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCC
TTTTCTTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGC
AATACCTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACA
AACGACGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGA
GCGAACTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTG
AATAGAGGCTATAGCAACGTCGCTAGGATTTATTAGTCGAACCAGGTGAC
AATATACTTGCATATCATTGAGTATTTTTTCTCTGAAAGAAACAGCCCCC
CTCCATCGCAACTGCAAACACAAATATCTTTTTAGGAAGAAATCGAGCTG
TACTTCGGTTTCTCTTTTGGATTGCTTTTTCTTTATACGGGTTTTCATGT
CCGATCCCGTATAATTTTCTTCACCATCTTTTTCTTGGTTTGAGAGAACT
GATCCAAGAATTACTTGCTTTTGTGCATCCGATCTCGGAGTTCCTTGGTC
TGCGAGTTCGTTTTCTTCTTTACTTTGATTCGATAATTCAGAATATTCTT
TTTGAGTAGGTGATCCT
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