CV712546

Overview
NameCV712546
Unique NameCV712546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CERDE (Putative membrane protein ycf1 OS=Ceratophyllum demersum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.367e-53
Identity = 116/257 (45.14%), Postives = 162/257 (63.04%), Query Frame = -2
Query:   49 SPTQKEYSELSNQSKEENELADQ--GTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 813
            S   K+Y EL N + +E E   +  G   S+ + +  LG  L NQ+K+ E +Y GSD+K R KKKQ     E +LD  L  YL  QLRW   ++  + I+ +++V C L+RLINP ++AI SIQ GEM L ++  ++  +L +L K G+ +IEPRRLS+K DGQF  YQ +GI+LVHK K +  + Y E  Y+D+ DF   I++H KM  N ++NHYDL+VPE IL  +RRRELR   C NS N     +NPVFF++
Sbjct: 1578 SSNPKDYLELDNGTPKEKEKQGKVKGNLGSNQKTRENLGLDLRNQQKNVENDYVGSDIKKRRKKKQFNNNKETELDSILTNYLVFQLRWNPFLN--KGIMKNIKVDCLLLRLINPKEIAIDSIQSGEMHLDLMSIQRDPSLTKLIKDGIFVIEPRRLSIKRDGQFIKYQTIGISLVHKRKYQTNRGYPENKYIDENDFYGSISQHGKMFVNGDENHYDLIVPENILSTRRRRELRIRNCLNSGNTE--NRNPVFFDS 1830          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_LOBMA (Putative membrane protein ycf1 OS=Lobularia maritima GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.785e-53
Identity = 114/251 (45.42%), Postives = 152/251 (60.56%), Query Frame = -2
Query:   49 KEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNN 801
            K++ E  N +KEE E A QG   SD +K+  L S LS QEK+ EENY    +K    KKQ K  TEV++D F+ R    Q+RW     F +KI+  ++VYC LVRL NP+++ ++SI+RGE++  IL+  K     +L K GM + EP RLS+KNDGQ  +Y+ +GI+LVHK K KI+KRY++K Y+DK                  KN+ D  VPE IL PKRRRE R LICFN K +N   +N  F  N
Sbjct: 1478 KKFLEFFNLNKEEKESAGQGERESDNEKKKNLESALSKQEKNIEENYAELKIKKHKTKKQHKSNTEVEIDSFMGRDSRFQMRWNSF--FNKKIITTLKVYCFLVRLKNPNEIILSSIERGEINPDILLISKTLPFSQLLKKGMWVFEPVRLSLKNDGQLIIYRTIGISLVHKKKNKISKRYKKKSYIDK------------------KNNCDFFVPENILSPKRRREFRILICFNLKKKNARDRNSRFDKN 1708          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_AETCO (Putative membrane protein ycf1 OS=Aethionema cordifolium GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.332e-53
Identity = 120/254 (47.24%), Postives = 159/254 (62.60%), Query Frame = -2
Query:   13 SKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVWIKTK 774
            S E+  L        + +KQ      L NQEK+ EENY  S +K R  KKQ K  TEV+LD FL RY   QLRW   ++  +KILN++++YC LVRL NP+ +AI+SI+RGEMSL IL+ +K     +L K G+LIIEP R SVKNDGQ  +Y+ +GI+LVHKN  +I++R       DKK  ++ I + +K T NR KN+YD  VPE IL PKRRRE R LIC   K ++   +N  F  N +  G+V  +TK
Sbjct: 1474 SNEKKYLRFYNLTNDEKEKQRNPQLALPNQEKNIEENYAESKIKKRQNKKQYKSNTEVELDLFLTRYSRFQLRWNFFLN--KKILNNVKIYCLLVRLKNPNKIAISSIERGEMSLDILMIEKNLTFAKLMKKGILIIEPLRSSVKNDGQLIIYRTIGISLVHKNNHQISQR-------DKKKIEKSITQLKKKTVNRKKNNYDFFVPEKILSPKRRREFRILICSKLKKKSTRYRNSRFDKNIQNCGQVLNQTK 1718          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_AETGR (Putative membrane protein ycf1 OS=Aethionema grandiflora GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.861e-53
Identity = 116/244 (47.54%), Postives = 156/244 (63.93%), Query Frame = -2
Query:   28 ELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRV 759
            E ADQG   SD +KQ      L NQEK+ EENY  S +K    KKQ K  TEV+LD FL RY   QLRW   ++   KILN++++YC LVRL NP+++AI+SI+R EM+L +L+ +K F   +L K G+LIIEP RLSVKNDGQ  +Y+ +GI+LVHKN  +I++R       +KK  ++ I K++K T NR K + D   PE +L PKRRRE R LIC   K ++   +N  F  N +  G+V
Sbjct: 1496 ESADQGELESDNEKQRNPELALPNQEKNIEENYAESKIKKPENKKQYKPNTEVELDLFLTRYSRFQLRWNFFLN--TKILNNIKIYCLLVRLKNPNEIAISSIERAEMNLDLLMIEKNFTFAKLMKKGILIIEPLRLSVKNDGQLIIYRTIGISLVHKNNHQISQR-------EKKKIEKAITKYKKKTVNRKKKNSDFFAPENLLSPKRRREFRILICSKFKTKSTRYRNSRFDKNIQNCGQV 1730          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1B_PIPCE (Putative membrane protein ycf1 C-terminal part OS=Piper cenocladum GN=ycf1 PE=5 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.861e-53
Identity = 119/253 (47.04%), Postives = 161/253 (63.64%), Query Frame = -2
Query:   43 KEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 801
            K+Y    N ++EE E   Q   RS+AQ Q         Q+   E++Y  SD++    K QSK   E +LD FLK+YL  QLRW    S  +K++++++VY  L+RL NP ++AI+SIQRGEM L +++ +K   L  L KGG+L+IEP RL +K D QFF+YQIVGI+LVHK+K++I  R + K YVDK DFD     + K     ++ HYDLLVPE IL P+RRRELR L+ FNS  +N M + P F  NGK
Sbjct: 1227 KKYPVFKNINQEEKEGQGQEVLRSNAQNQ---------QKSFIEKDYKESDIQKPRTKAQSKNNKETELDSFLKKYLLFQLRWNN--SLNQKVIDNIKVYSLLLRLKNPREIAISSIQRGEMRLDVMLFQKDITLSGLIKGGLLVIEPIRLYLKWDFQFFMYQIVGISLVHKDKQQIKTRCRIKEYVDKMDFDGSFLPYGKTLVKGHEKHYDLLVPEHILSPRRRRELRILMSFNSGKENIMGRGP-FILNGK 1467          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_SPIOL (Putative membrane protein ycf1 OS=Spinacia oleracea GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.116e-50
Identity = 113/250 (45.20%), Postives = 158/250 (63.20%), Query Frame = -2
Query:   61 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGS-DMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKIT-KRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPV 804
            +K+  EL N++++E EL           K+ +   V  N EKD EE+Y    D+K  IK+KQ K   E + D FLKRYL  QL+W  A S  EK+++++QVYC ++RLINP ++ I+SI+R E+S+ I++ +K F      +  +LIIEP RLS++ DGQF LYQ +GI+LVHK+K +   KRY E   VDK           K  G RNKN++DLL PE +L P+RRRELR L+C NS+N NG+  NP+
Sbjct: 1541 EKKSFELENRNQDEKELVS---------KEDLGSYVQENYEKDIEEDYISFIDIKKPIKQKQPKSVIEAEFDLFLKRYLLFQLKW--ADSLNEKLMDNIQVYCLVLRLINPIEILISSIERKELSMDIMLDRKDFNCPNWKQKRVLIIEPIRLSIRGDGQFLLYQTIGISLVHKSKHQNNQKRYSEN--VDK-----------KFLGERNKNNFDLLAPENLLSPRRRRELRILLCLNSRNNNGVNTNPM 1766          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_SOYBN (Putative membrane protein ycf1 OS=Glycine max GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.668e-49
Identity = 111/272 (40.81%), Postives = 164/272 (60.29%), Query Frame = -2
Query:   43 SPTQKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTR---IKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFAL----------KELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFI--AKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 813
            S  +K  +        E EL  +   +++   Q  L S +SNQEKD E +Y GSD +     IKKK+ K + E +L+F L+ +L L L W   +   ++I N+++VYC L+RL N  ++ IASIQRGE+ L I++ + +  L           +  K  + +IEP RLS KN+ QFF+YQ +G++L+ KNKRKI  +Y EK +V+KK+F ++I   + QK+T  + K++ DLLVPE IL  +RRRELR LIC N  N N M +N +F+N  K
Sbjct: 1455 SENKKNITRKKKNESLELELETRNRAKAEYPDQRNLESSISNQEKDIENDYVGSDSEKNSKGIKKKKDKNKMEAELNFLLRNFLILHLNWNNFLG--QRIFNNVKVYCLLIRLKNLREITIASIQRGELGLDIMMIQNQKNLILLGLRKKKNNKFMKKEIFVIEPVRLSRKNNKQFFMYQTIGLSLIQKNKRKIYHKYPEKIHVNKKNFYKYITRTRDQKITEKKEKDNSDLLVPENILSARRRRELRILICLNPNNINSMHRNTIFYNPNK 1724          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_RANMC (Putative membrane protein ycf1 OS=Ranunculus macranthus GN=ycf1 PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.761e-46
Identity = 102/246 (41.46%), Postives = 153/246 (62.20%), Query Frame = -2
Query:   52 ELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 789
            +L N+++EE +   +G   S  QK+   GS    ++ DG+E++  S+++  I KK+SK     +LDFFLK+Y   QLRW    SF EKI+N++++YC L+RL NP ++AI+SIQR EMS+ +++  K     +L K  +L+IEP RLS+  DG F +YQ + I  VH +K +  K+   K  VD K   E +A+H+ +  NR+KN+YD L+PE +L  +RRRELR  IC N +N     +N  F N
Sbjct: 1482 DLENRNQEETQQPVRGDLGSYVQKENNPGSDPLKKQTDGKEDFDRSNIQRNINKKKSKSNIAAELDFFLKKYFLFQLRWDN--SFSEKIINNIKIYCLLLRLKNPKEIAISSIQRDEMSMDVMLVPKATTFIKLRKRRLLLIEPARLSINWDGLFIMYQTLVILQVHNSKYQTCKK---KINVDNKGLIESMARHEILFRNRDKNNYDFLIPENLLSSRRRRELRIQICLNLRNFKVGDRNREFSN 1722          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_DAUCA (Putative membrane protein ycf1 OS=Daucus carota GN=ycf1 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.151e-46
Identity = 107/255 (41.96%), Postives = 155/255 (60.78%), Query Frame = -2
Query:   52 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRW---RGAV-SFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 804
            +K Y EL N+++EE + A +   RS AQ          NQ+K          MK + K +   R    ++ F  K YL  Q  W    G +    E+++N++++YC+L+ L NP D  I+SIQR E++L I++ ++K    EL K G+  ++P RLSVKNDG F +YQ VGI+LVHK+K +  +RY+E+ Y++KK  DE I ++Q +   R+K HYD +VPE IL  +RRRELR L+ FNSKN N + KNPVF N
Sbjct: 1529 EKIYYELMNRNQEEKKTAGRRGLRSYAQ----------NQDK----------MKKKYKIRNKMRR---EIIFLRKHYLLFQ--WIIDDGLIPKLTERMINNIKIYCYLLGLRNPRDTTISSIQRKELNLDIMVIRQKLTPIELNKKGIFFLDPTRLSVKNDGYFIIYQTVGISLVHKSKYQTPQRYREQRYINKKKLDESIPRYQIILRKRDKKHYDFVVPENILSSRRRRELRILLSFNSKNLNSVDKNPVFCN 1758          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_AMBTC (Putative membrane protein ycf1 OS=Amborella trichopoda GN=ycf1 PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 6.800e-45
Identity = 109/266 (40.98%), Postives = 158/266 (59.40%), Query Frame = -2
Query:   43 QKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQE--------KDG----EENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 804
            QK+Y EL  + +EE +  DQ   R D + Q   GS + NQ+        ++G    +E+YT  D+    KKKQSK   E +LD  LKRYL  Q RW    S ++K++N++++Y  L+RL++P  + I+SIQRGEM L I++  K   L +L KGG+  +EP RLS K +GQF +YQ + I+LVHK K++  +RY+E  Y+D+  FD FI ++ ++  N +  +YDL VPE I   +RRRELR L   N    N    N +F N  K
Sbjct: 1469 QKKYLELGTRDREEKKWWDQEDLRPDTKYQEYFGSDVKNQKDVELDVWYREGKSREQEDYT--DINKSRKKKQSKSNKEAELDLLLKRYLLFQFRWDD--SLKKKMINNIKLYSLLLRLMDPKKIVISSIQRGEMWLDIMLIHKDLPLTKLKKGGVFTMEPLRLSRKWNGQFLMYQTLSISLVHKIKQQTDRRYRETKYIDENFFDLFIPRNGRVFVNGDNKNYDLFVPENISALRRRRELRILSRLNPGKGN---INIIFSNRKK 1727          
The following BLAST results are available for this feature:
BLAST of CV712546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_CERDE1.367e-5345.14Putative membrane protein ycf1 OS=Ceratophyllum de... [more]
YCF1_LOBMA1.785e-5345.42Putative membrane protein ycf1 OS=Lobularia mariti... [more]
YCF1_AETCO2.332e-5347.24Putative membrane protein ycf1 OS=Aethionema cordi... [more]
YCF1_AETGR8.861e-5347.54Putative membrane protein ycf1 OS=Aethionema grand... [more]
YCF1B_PIPCE8.861e-5347.04Putative membrane protein ycf1 C-terminal part OS=... [more]
YCF1_SPIOL4.116e-5045.20Putative membrane protein ycf1 OS=Spinacia olerace... [more]
YCF1_SOYBN2.668e-4940.81Putative membrane protein ycf1 OS=Glycine max GN=y... [more]
YCF1_RANMC2.761e-4641.46Putative membrane protein ycf1 OS=Ranunculus macra... [more]
YCF1_DAUCA6.151e-4641.96Putative membrane protein ycf1 OS=Daucus carota GN... [more]
YCF1_AMBTC6.800e-4540.98Putative membrane protein ycf1 OS=Amborella tricho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712546 ID=CV712546; Name=CV712546; organism=Citrus sinensis; type=EST; length=817bp
CCTCGAGCAGATTTTTGTTTTTATCCAAACGCGGCCGCCGCCCTTTCCGT
TATTAAAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTG
AAACAAATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGT
TTCAGGAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTT
TTTGATGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCC
TTTTCTTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGC
AATACCTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACA
AACGACGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGA
GCGAACTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTG
AATAGAGGCTATAGCAACGTCGCTAGGATTTATTAGTCGAACCAGGTGAC
AATATACTTGCATATCATTGAGTATTTTTTCTCTGAAAGAAACAGCCCCC
CTCCATCGCAACTGCAAACACAAATATCTTTTTAGGAAGAAATCGAGCTG
TACTTCGGTTTCTCTTTTGGATTGCTTTTTCTTTATACGGGTTTTCATGT
CCGATCCCGTATAATTTTCTTCACCATCTTTTTCTTGGTTTGAGAGAACT
GATCCAAGAATTACTTGCTTTTGTGCATCCGATCTCGGAGTTCCTTGGTC
TGCGAGTTCGTTTTCTTCTTTACTTTGATTCGATAATTCAGAATATTCTT
TTTGAGTAGGTGATCCT
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