CV712546

Overview
NameCV712546
Unique NameCV712546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CUCSA (Putative membrane protein ycf1 OS=Cucumis sativus GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 104/257 (40.47%), Postives = 152/257 (59.14%), Query Frame = -2
Query:   43 TQKEYSELSNQSKEENE-LADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKK-FALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 807
            ++K+  E  N +K + E +A +G           + SVLSN  K+ +++  G+D+K  IKKKQSK++ E +L      +   QL W      +   +N +  +  ++R ++   +++A+I+  E SL  L+         EL + G+ IIEP RLS+KNDG+F + Q +GI+LV KNK ++ +RYQEKGY  K+ F E IA HQK T NR  NHYDLLVPE IL P+ RRE R LICFNS N+N + +N  F +  K
Sbjct: 1567 SKKKLIEKKNGNKAKKESVAKEG-----------VDSVLSNHTKNLQKDSAGADVKKGIKKKQSKKKIEGKLGVLRTGHFRFQLNWPNPEISKSLFMN-LNGFSFMLRRLDLKKLSLAAIRNNEFSLEFLLPPSDDITFHELLEKGIFIIEPVRLSLKNDGKFIMSQTIGISLVQKNKYQLNQRYQEKGYPYKRSFAESIAIHQKRTENRTSNHYDLLVPENILSPRGRREFRILICFNSGNKNDIHRNTAFDDGNK 1811          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_LOTJA (Putative membrane protein ycf1 OS=Lotus japonicus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.675e-43
Identity = 110/262 (41.98%), Postives = 159/262 (60.69%), Query Frame = -2
Query:   43 ELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIK---KKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILI--TKKKFAL------KELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFI--AKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 789
            E  N++K+E       T R D  K       LSNQEKD EE+Y  SD K   K   KK+ K + E +++  L++YL   L W+G  S  ++++N+++VYC L+RL N   +AI+SIQRGE+SL I++   +K   L      KE  + G+ IIEP RLS KN+ QFF+Y+   + L+HK+KR+I +R  EK  +DK+ F + I   + Q++T N+ K HY L+V E IL  +RRRELR LICFN ++ N M +  +F N  K
Sbjct: 1478 ETPNRAKKEY------TSRVDLNKPS-----LSNQEKDIEEDYGESDSKKGGKDKNKKKYKNKIEAEVNLLLRKYLNFHLNWKG--SLNKRVINNVKVYCLLIRLKNIKQIAISSIQRGELSLDIMMIQNEKDSTLTGFRKKKEFIEKGIFIIEPVRLSRKNNEQFFMYETARLLLIHKSKRQINQRNPEKSDLDKQIFYKNIPPKRDQRITQNKEKKHYALVVIENILSARRRRELRILICFNPRSINSMPRKTIFDNENK 1726          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_HELAN (Putative membrane protein ycf1 OS=Helianthus annuus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.568e-41
Identity = 95/204 (46.57%), Postives = 136/204 (66.67%), Query Frame = -2
Query:   43 DMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVS-FREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 651
            ++K +   ++S  E+  +L   +K    LQLRW G ++   +K++N++Q+Y  LV LIN   ++I+ IQR EM+L I+  +++  L +LTK G+LI+EP RLSVKNDGQFF+YQI+GI+LVHK+K +  +RY+    V K  FDE I +H+  T NR+K + DLLVPE IL  +RRRELR LI FN KNQN + +   F    K
Sbjct: 1444 ELKNQNNIEESLLESIEKLQILIKGDFPLQLRWTGRLNQLNQKMMNNIQIYGLLVSLINVRKISISYIQRKEMNLDIM--RRRLNLTQLTKKGILIMEPARLSVKNDGQFFMYQIIGISLVHKSKHQSNQRYRNPQNVAKNHFDESIPRHK--TLNRDKKNSDLLVPEKILSSRRRRELRILISFNLKNQNNVHRKKFFCKENK 1643          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_EPIVI (Putative membrane protein ycf1 OS=Epifagus virginiana GN=ycf1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.124e-39
Identity = 104/247 (42.11%), Postives = 150/247 (60.73%), Query Frame = -2
Query:   43 NQSKEENELADQGTPRSDAQKQVILGSVLS-NQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 780
            N SK  NE     T R D      LGSVL  +Q+KD EE+Y  S+ + R  KKQ K +TE +LDFFLKR    QLR+   ++  ++++N++++YC L+RLI+P  + I+SI + E++L I+  +K   L EL K G+LIIE  R S K  GQF +YQ +GI+L++KNK++  K+YQ++ Y  K                  K  ++LL PE IL  +RR++LR LIC NSKN N +  NP+F+N  K
Sbjct: 1454 NSSKTINEKKGP-TGRED------LGSVLILSQKKDIEESYERSEKEKR--KKQYKNKTEAELDFFLKRCFLFQLRFSDTLN--KRMINNIKIYCLLLRLIDPRKIIISSIHKREINLDIIPIRKNLILTELIKNGVLIIETIRFSRKY-GQFSMYQTIGISLINKNKQQTNKKYQDQIYFSK------------------KKKFNLLFPENILSFRRRKKLRILICLNSKNVNDIDINPIFWNEKK 1670          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_PHAVU (Putative membrane protein ycf1 OS=Phaseolus vulgaris GN=ycf1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.885e-35
Identity = 95/264 (35.98%), Postives = 148/264 (56.06%), Query Frame = -2
Query:   43 SNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYT----GSDMKTR-IKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFAL----------KELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFI--AKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGK 783
            S  SK    ++++   R   +K+ I     S +++D E+N      GS+  +  IKKK+ K   EV+L F ++ +L     W+  +   + I ++++VYC L+RL N   + IASIQRGE+ L I+I + +  L           +L K  + +IEP RLS KN+ QF   + + ++L+HKNKRKI K+Y +K +V+KK F ++I   + QK+T    K   + LVPE IL  +RRRELR  IC    N+N + +N +F N  K
Sbjct: 1435 SKVSKVNKNVSEKNITR---KKKRIAVFRASKKQEDIEKNSVAVGRGSEKNSYVIKKKKVKNNMEVELHFLVRNFLIFHFNWKNFLG--QNIFHNVKVYCLLIRLTNLRKMTIASIQRGELGLDIMIIQNQKNLTLPGLSKNKNNKLRKKELFVIEPVRLSRKNNKQFLKSKTMDLSLIHKNKRKIDKKYLKKIHVNKKSFYKYITRTRDQKITEKNEKEILNFLVPENILSARRRRELRMRICLYPNNRNSIHRNTIFDNENK 1693          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_LACSA (Putative membrane protein ycf1 OS=Lactuca sativa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.054e-34
Identity = 86/193 (44.56%), Postives = 118/193 (61.14%), Query Frame = -2
Query:   43 ETEVQLDFFLKRYLCLQLRWRGAVS-FREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICF--NSKNQNGMQKNPVFFNNGK 612
            E+  +L  FLK    LQLRW G V+   +KI+N++Q+Y  L+ LIN   + I+ IQR EM L I+   +   L +L K G+LI+EP RLS+KNDGQFF+YQI+ I+LVHK+K +  +RYQ               K + +  N +K + DLLVPE IL  +RRRELR LI F  N KN  G+ +N + +N  K
Sbjct: 1489 ESTEKLKIFLKGDFPLQLRWAGRVNQLNQKIMNNIQIYGLLLSLINVRKITISYIQRKEMDLGIM--SRNLNLTQLMKTGILILEPARLSLKNDGQFFMYQIISISLVHKSKYQSNQRYQ---------------KQENVAKNIDKKNSDLLVPEKILSSRRRRELRILISFNLNLKNNTGVDRNTLVYNENK 1664          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.964e-32
Identity = 98/295 (33.22%), Postives = 152/295 (51.53%), Query Frame = -2
Query:   52 KEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLS---NQEKDGEENYT-GSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVS--FREKILNDMQVYCHLVRL-----------INPSDVAIASIQRGEMSLPILITKKKFALKELT--KGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKG--YVDKKDFDEFIAKHQKMTGN------------------------RNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 801
            K+ ++   + +E+  +  + T + D + +  L SV S   N  KD +E      D      KK + +E + +LD FL+RY    ++W   V      K   + +VY +L RL           I+P+ + ++S +RGE++  IL T+   + K+L   +  ++  EP RL  KN+GQF +YQ +GI+LVH NK +I  R+++K   Y  K +FDE I  H+++T N                         +KNH DLLVPE I   +RRR+LR L C NSKN+N + +NPVF N
Sbjct: 1578 KKEAKKEAKKEEKQNIKKELTTKGDLENKGDLESVPSKEKNPSKDSKEKKDIQKDSAESTTKKVTSKELQKELDAFLQRYSGYLVKWNRRVDPDIVPKSEINWEVYSYLYRLFDDENPRNRKEIDPTHLVLSSAKRGELAFEILATRPIQSWKKLLLKRKELVFFEPIRLFGKNNGQFIMYQTIGISLVHNNKHEIQPRFRKKKKRYGSKTNFDESIPPHERITRNDERIPTNDEDEKRNKRLRINYERNADKNHLDLLVPENIFSFRRRRKLRILNCLNSKNRNDVDRNPVFCN 1872          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSRE (Putative membrane protein ycf1 OS=Cuscuta reflexa GN=ycf1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.471e-31
Identity = 94/266 (35.34%), Postives = 143/266 (53.76%), Query Frame = -2
Query:   13 KEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQE--KDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKK-FALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFNNGKGGGRVWIKTK 801
            K+ SE  ++ K E + + Q +     QK        +N E  KD +E+ T SD       K++K+E E +L+ F K+Y   QLR  G  +F++    ++Q+YC L+RL N   + ++ IQR + +L I+ T    F + E  K   L+++P  L +K +G+F LYQIVGI+LVHK+K +  + Y+++           I     MT N   NH D+LV E IL  + RRE RTLIC N KN NG+  N +F +  K   + W + K
Sbjct: 1455 KQKSETDSKQKSETD-SKQKSETDSKQKSETDSKQKNNAEIQKDLDEDSTKSD-------KKNKKEKETELELFAKKYFLFQLR--GDPTFKKSFFKNIQIYCLLLRLTNRKKMTLSCIQRRKFNLRIMPTMTNLFNVPEFLKMTGLVMDPLPLLIKTNGKFLLYQIVGISLVHKSKHQTNQTYRKR-----------IIIRAGMT-NLENNHLDVLVLENILSSRCRREFRTLICLNYKNWNGVNTNSIFCS--KNCNQFWEERK 1696          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_CUSEX (Putative membrane protein ycf1 OS=Cuscuta exaltata GN=ycf1 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.774e-30
Identity = 85/246 (34.55%), Postives = 131/246 (53.25%), Query Frame = -2
Query:   58 SELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILITKKKFA-LKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVF 792
            SE+ +Q K E +       ++ A+ Q  L           EE+ T SD         +K+ETE++L+ F K+Y   QLR  G  +F +    ++Q+YC L+RL N   + ++ IQR +++L I+ +      + E  K   L+++P  LS+K DG+F LY+IVGI+LVHK+K +  K+Y++   +   +                 NH D+LV E IL  + RRELRTLICFN KN NG+    +F
Sbjct: 1360 SEIDSQQKSETDSETDSQQKNIAETQKYL-----------EEDSTKSD---------TKKETELELELFTKKYFLFQLR--GDQTFNKSFFKNIQIYCLLLRLRNRKKMTLSCIQRRKLNLRIMPSMTNLLNVPEFLKRTGLVMDPLPLSIKTDGKFLLYKIVGISLVHKSKDQTNKKYRKTRIIRAVE----------------NNHLDVLVLENILSSRCRRELRTLICFNYKNWNGVNTTSIF 1567          
BLAST of CV712546 vs. ExPASy Swiss-Prot
Match: YCF1_IPOPU (Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 77/255 (30.20%), Postives = 135/255 (52.94%), Query Frame = -2
Query:   52 SPTQKEYSELSNQSKEENELADQGTPRSDAQKQVILGSVLSNQEKDGEENYTGSDMKTRIKKKQSKRETEVQLDFFLKRYLCLQLRWRGAVSFREKILNDMQVYCHLVRLINPSDVAIASIQRGEMSLPILI-TKKKFALKELTKGGMLIIEPRRLSVKNDGQFFLYQIVGIALVHKNKRKITKRYQEKGYVDKKDFDEFIAKHQKMTGNRNKNHYDLLVPETILLPKRRRELRTLICFNSKNQNGMQKNPVFFN 813
            S T  E    +N S++++E   +    +D++K+    S   ++    +++ T S+ K+    ++    T    + F+K+Y  LQLRW    +  + I  ++++       IN   + ++ I+R ++ L ++  +K   ++ +  K   ++++   LSVKN+GQF +YQ +GI+LVHK+K K  ++Y++                Q++   R  NH+D LV E IL  +RRRELR LICFNS N N +  N VFFN
Sbjct: 1751 SKTNSEKKSKTN-SEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSETDSEKKSLSTRELRELFMKKYFLLQLRWDQR-NIGQNIRKNVRILALPKSSINLETMTLSCIERRKLQLNVMWKSKSNLSILKFFKSIGMVVDRLGLSVKNNGQFLMYQTIGISLVHKSKNKTNQQYRK----------------QRIIRARENNHFDALVLENILSSRRRRELRILICFNSNNWNDVDTNSVFFN 1987          
The following BLAST results are available for this feature:
BLAST of CV712546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
YCF1_CUCSA4.408e-4440.47Putative membrane protein ycf1 OS=Cucumis sativus ... [more]
YCF1_LOTJA1.675e-4341.98Putative membrane protein ycf1 OS=Lotus japonicus ... [more]
YCF1_HELAN1.568e-4146.57Putative membrane protein ycf1 OS=Helianthus annuu... [more]
YCF1_EPIVI1.124e-3942.11Putative membrane protein ycf1 OS=Epifagus virgini... [more]
YCF1_PHAVU4.885e-3535.98Putative membrane protein ycf1 OS=Phaseolus vulgar... [more]
YCF1_LACSA7.054e-3444.56Putative membrane protein ycf1 OS=Lactuca sativa G... [more]
YCF1_JASNU2.964e-3233.22Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]
YCF1_CUSRE1.471e-3135.34Putative membrane protein ycf1 OS=Cuscuta reflexa ... [more]
YCF1_CUSEX2.774e-3034.55Putative membrane protein ycf1 OS=Cuscuta exaltata... [more]
YCF1_IPOPU4.428e-2830.20Putative membrane protein ycf1 OS=Ipomoea purpurea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_0001I19_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensis cDNA clone CS_AEa0001I19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV712546 ID=CV712546; Name=CV712546; organism=Citrus sinensis; type=EST; length=817bp
CCTCGAGCAGATTTTTGTTTTTATCCAAACGCGGCCGCCGCCCTTTCCGT
TATTAAAAAATACTGGATTTTTCTGCATACCATTTTGATTCTTCGAATTG
AAACAAATTAGGGTTCTTAATTCTCTACGACGTTTAGGGAGTAAAATAGT
TTCAGGAACAAGCAAATCATAATGATTTTTGTTTCTATTTCCAGTCATTT
TTTGATGTTTTGCAATGAATTCATCAAAATCTTTTTTATCAACATAGCCC
TTTTCTTGGTATCTTTTAGTAATTTTGCGCTTATTCTTATGAACCAATGC
AATACCTACGATTTGATATAGAAAAAATTGTCCATCATTTTTTACAGACA
AACGACGGGGTTCGATAATAAGCATTCCCCCTTTCGTCAATTCTTTAAGA
GCGAACTTCTTCTTAGTGATCAAAATAGGCAGACTCATTTCTCCCCTTTG
AATAGAGGCTATAGCAACGTCGCTAGGATTTATTAGTCGAACCAGGTGAC
AATATACTTGCATATCATTGAGTATTTTTTCTCTGAAAGAAACAGCCCCC
CTCCATCGCAACTGCAAACACAAATATCTTTTTAGGAAGAAATCGAGCTG
TACTTCGGTTTCTCTTTTGGATTGCTTTTTCTTTATACGGGTTTTCATGT
CCGATCCCGTATAATTTTCTTCACCATCTTTTTCTTGGTTTGAGAGAACT
GATCCAAGAATTACTTGCTTTTGTGCATCCGATCTCGGAGTTCCTTGGTC
TGCGAGTTCGTTTTCTTCTTTACTTTGATTCGATAATTCAGAATATTCTT
TTTGAGTAGGTGATCCT
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